Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.65■□□□□ 0.1
MMP28Q9H239 PHGDH-209ENST00000641074 1780 ntBASIC15.65■□□□□ 0.1
MMP28Q9H239 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
MMP28Q9H239 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
MMP28Q9H239 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MMP28Q9H239 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
MMP28Q9H239 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MMP28Q9H239 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MMP28Q9H239 RPS2P55-201ENST00000397318 883 ntBASIC15.65■□□□□ 0.1
MMP28Q9H239 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MMP28Q9H239 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MMP28Q9H239 AC012618.2-201ENST00000428058 849 ntBASIC15.65■□□□□ 0.1
MMP28Q9H239 AC004980.1-204ENST00000429707 299 ntBASIC15.65■□□□□ 0.1
MMP28Q9H239 PTPA-216ENST00000432651 857 ntTSL 2 BASIC15.65■□□□□ 0.1
MMP28Q9H239 PPP1R14BP5-201ENST00000440334 435 ntBASIC15.65■□□□□ 0.1
MMP28Q9H239 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC15.65■□□□□ 0.1
MMP28Q9H239 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC15.65■□□□□ 0.1
MMP28Q9H239 AC107956.1-201ENST00000494359 873 ntBASIC15.65■□□□□ 0.1
MMP28Q9H239 REXO2-216ENST00000544196 452 ntTSL 3 BASIC15.65■□□□□ 0.1
MMP28Q9H239 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC15.65■□□□□ 0.1
MMP28Q9H239 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC15.65■□□□□ 0.1
MMP28Q9H239 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC15.65■□□□□ 0.1
MMP28Q9H239 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC15.65■□□□□ 0.1
MMP28Q9H239 AC026271.3-201ENST00000571884 352 ntBASIC15.65■□□□□ 0.1
MMP28Q9H239 REXO1L12P-201ENST00000622156 912 ntBASIC15.65■□□□□ 0.1
MMP28Q9H239 AL031985.4-201ENST00000642138 673 ntBASIC15.65■□□□□ 0.1
MMP28Q9H239 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.65■□□□□ 0.1
MMP28Q9H239 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MMP28Q9H239 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
MMP28Q9H239 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
MMP28Q9H239 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MMP28Q9H239 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MMP28Q9H239 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MMP28Q9H239 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MMP28Q9H239 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MMP28Q9H239 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC15.65■□□□□ 0.1
MMP28Q9H239 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MMP28Q9H239 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC15.65■□□□□ 0.1
MMP28Q9H239 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC15.65■□□□□ 0.1
MMP28Q9H239 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
MMP28Q9H239 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.65■□□□□ 0.1
MMP28Q9H239 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
MMP28Q9H239 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MMP28Q9H239 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
MMP28Q9H239 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.1
MMP28Q9H239 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
MMP28Q9H239 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
MMP28Q9H239 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MMP28Q9H239 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
MMP28Q9H239 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
MMP28Q9H239 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MMP28Q9H239 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
MMP28Q9H239 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
MMP28Q9H239 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
MMP28Q9H239 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
MMP28Q9H239 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
MMP28Q9H239 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MMP28Q9H239 AC211429.1-201ENST00000415277 523 ntBASIC15.64■□□□□ 0.09
MMP28Q9H239 SAPCD2P4-201ENST00000424595 1171 ntBASIC15.64■□□□□ 0.09
MMP28Q9H239 TSPY7P-201ENST00000431358 1114 ntBASIC15.64■□□□□ 0.09
MMP28Q9H239 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC15.64■□□□□ 0.09
MMP28Q9H239 GLRB-205ENST00000512619 728 ntTSL 3 BASIC15.64■□□□□ 0.09
MMP28Q9H239 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC15.64■□□□□ 0.09
MMP28Q9H239 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC15.64■□□□□ 0.09
MMP28Q9H239 AC233702.5-201ENST00000584107 538 ntBASIC15.64■□□□□ 0.09
MMP28Q9H239 AL603756.1-201ENST00000606511 2163 ntBASIC15.64■□□□□ 0.09
MMP28Q9H239 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC15.64■□□□□ 0.09
MMP28Q9H239 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC15.64■□□□□ 0.09
MMP28Q9H239 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC15.64■□□□□ 0.09
MMP28Q9H239 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
MMP28Q9H239 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
MMP28Q9H239 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
MMP28Q9H239 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.64■□□□□ 0.09
MMP28Q9H239 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
MMP28Q9H239 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC15.64■□□□□ 0.09
MMP28Q9H239 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC15.64■□□□□ 0.09
MMP28Q9H239 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
MMP28Q9H239 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC15.63■□□□□ 0.09
MMP28Q9H239 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
MMP28Q9H239 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MMP28Q9H239 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
MMP28Q9H239 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
MMP28Q9H239 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
MMP28Q9H239 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
MMP28Q9H239 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MMP28Q9H239 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MMP28Q9H239 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
MMP28Q9H239 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
MMP28Q9H239 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC15.63■□□□□ 0.09
MMP28Q9H239 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC15.63■□□□□ 0.09
MMP28Q9H239 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC15.63■□□□□ 0.09
MMP28Q9H239 Z85996.1-201ENST00000494644 937 ntBASIC15.63■□□□□ 0.09
MMP28Q9H239 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
MMP28Q9H239 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
MMP28Q9H239 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
MMP28Q9H239 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
MMP28Q9H239 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC15.63■□□□□ 0.09
MMP28Q9H239 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC15.63■□□□□ 0.09
MMP28Q9H239 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
MMP28Q9H239 AC026691.1-201ENST00000602502 2017 ntBASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms