Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.96■□□□□ 0.31
VMP1Q96GC9 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VMP1Q96GC9 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VMP1Q96GC9 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
VMP1Q96GC9 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VMP1Q96GC9 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VMP1Q96GC9 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VMP1Q96GC9 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.96■□□□□ 0.31
VMP1Q96GC9 Z83836.1-201ENST00000624605 1642 ntBASIC16.96■□□□□ 0.31
VMP1Q96GC9 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VMP1Q96GC9 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.96■□□□□ 0.31
VMP1Q96GC9 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
VMP1Q96GC9 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VMP1Q96GC9 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VMP1Q96GC9 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VMP1Q96GC9 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VMP1Q96GC9 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.96■□□□□ 0.31
VMP1Q96GC9 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC16.96■□□□□ 0.31
VMP1Q96GC9 AL390719.2-201ENST00000606993 987 ntBASIC16.96■□□□□ 0.31
VMP1Q96GC9 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.96■□□□□ 0.31
VMP1Q96GC9 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
VMP1Q96GC9 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VMP1Q96GC9 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VMP1Q96GC9 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.96■□□□□ 0.31
VMP1Q96GC9 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
VMP1Q96GC9 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VMP1Q96GC9 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.96■□□□□ 0.31
VMP1Q96GC9 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
VMP1Q96GC9 AC099343.3-201ENST00000605834 2503 ntBASIC16.96■□□□□ 0.3
VMP1Q96GC9 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VMP1Q96GC9 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.3
VMP1Q96GC9 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
VMP1Q96GC9 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VMP1Q96GC9 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VMP1Q96GC9 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
VMP1Q96GC9 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VMP1Q96GC9 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VMP1Q96GC9 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.95■□□□□ 0.3
VMP1Q96GC9 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VMP1Q96GC9 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VMP1Q96GC9 AL024508.2-201ENST00000607749 1894 ntBASIC16.95■□□□□ 0.3
VMP1Q96GC9 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC16.95■□□□□ 0.3
VMP1Q96GC9 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VMP1Q96GC9 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
VMP1Q96GC9 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC16.95■□□□□ 0.3
VMP1Q96GC9 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
VMP1Q96GC9 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
VMP1Q96GC9 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VMP1Q96GC9 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VMP1Q96GC9 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VMP1Q96GC9 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VMP1Q96GC9 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VMP1Q96GC9 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.95■□□□□ 0.3
VMP1Q96GC9 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VMP1Q96GC9 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.95■□□□□ 0.3
VMP1Q96GC9 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC16.95■□□□□ 0.3
VMP1Q96GC9 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
VMP1Q96GC9 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VMP1Q96GC9 AC113404.2-201ENST00000507884 177 ntBASIC16.95■□□□□ 0.3
VMP1Q96GC9 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.95■□□□□ 0.3
VMP1Q96GC9 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.95■□□□□ 0.3
VMP1Q96GC9 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.95■□□□□ 0.3
VMP1Q96GC9 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC16.95■□□□□ 0.3
VMP1Q96GC9 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC16.95■□□□□ 0.3
VMP1Q96GC9 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
VMP1Q96GC9 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VMP1Q96GC9 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
VMP1Q96GC9 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
VMP1Q96GC9 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
VMP1Q96GC9 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
VMP1Q96GC9 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.95■□□□□ 0.3
VMP1Q96GC9 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VMP1Q96GC9 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
VMP1Q96GC9 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.95■□□□□ 0.3
VMP1Q96GC9 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VMP1Q96GC9 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VMP1Q96GC9 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.94■□□□□ 0.3
VMP1Q96GC9 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.94■□□□□ 0.3
VMP1Q96GC9 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VMP1Q96GC9 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
VMP1Q96GC9 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.94■□□□□ 0.3
VMP1Q96GC9 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.94■□□□□ 0.3
VMP1Q96GC9 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
VMP1Q96GC9 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
VMP1Q96GC9 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.94■□□□□ 0.3
VMP1Q96GC9 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC16.94■□□□□ 0.3
VMP1Q96GC9 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
VMP1Q96GC9 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VMP1Q96GC9 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
VMP1Q96GC9 TSSC2-201ENST00000450217 709 ntBASIC16.94■□□□□ 0.3
VMP1Q96GC9 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC16.94■□□□□ 0.3
VMP1Q96GC9 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
VMP1Q96GC9 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VMP1Q96GC9 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VMP1Q96GC9 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.94■□□□□ 0.3
VMP1Q96GC9 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.94■□□□□ 0.3
VMP1Q96GC9 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
VMP1Q96GC9 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
VMP1Q96GC9 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.94■□□□□ 0.3
VMP1Q96GC9 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms