Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 YBX1P2-201ENST00000489612 999 ntBASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 AC005363.2-201ENST00000618631 242 ntBASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 KRT89P-201ENST00000620027 1478 ntBASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CLHC1Q8NHS4 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 HLA-F-220ENST00000434407 884 ntBASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 AL031432.5-201ENST00000641059 760 ntBASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.98■□□□□ 0.31
CLHC1Q8NHS4 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 TSPY12P-201ENST00000421279 868 ntBASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 AC117947.1-201ENST00000427448 529 ntBASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CLHC1Q8NHS4 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.96■□□□□ 0.31
CLHC1Q8NHS4 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.96■□□□□ 0.31
CLHC1Q8NHS4 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
CLHC1Q8NHS4 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
CLHC1Q8NHS4 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLHC1Q8NHS4 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CLHC1Q8NHS4 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CLHC1Q8NHS4 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
CLHC1Q8NHS4 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CLHC1Q8NHS4 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
CLHC1Q8NHS4 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
CLHC1Q8NHS4 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLHC1Q8NHS4 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CLHC1Q8NHS4 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLHC1Q8NHS4 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CLHC1Q8NHS4 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.96■□□□□ 0.31
CLHC1Q8NHS4 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
CLHC1Q8NHS4 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms