Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC19.72■□□□□ 0.75
USP38Q8NB14 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP38Q8NB14 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP38Q8NB14 CD63-204ENST00000546939 779 ntTSL 3 BASIC19.72■□□□□ 0.75
USP38Q8NB14 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC19.72■□□□□ 0.75
USP38Q8NB14 AP001269.4-201ENST00000609611 512 ntBASIC19.72■□□□□ 0.75
USP38Q8NB14 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP38Q8NB14 AC099343.3-201ENST00000605834 2503 ntBASIC19.72■□□□□ 0.75
USP38Q8NB14 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP38Q8NB14 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP38Q8NB14 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP38Q8NB14 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.72■□□□□ 0.75
USP38Q8NB14 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP38Q8NB14 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
USP38Q8NB14 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
USP38Q8NB14 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
USP38Q8NB14 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.71■□□□□ 0.75
USP38Q8NB14 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.71■□□□□ 0.75
USP38Q8NB14 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
USP38Q8NB14 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USP38Q8NB14 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP38Q8NB14 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP38Q8NB14 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
USP38Q8NB14 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USP38Q8NB14 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
USP38Q8NB14 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP38Q8NB14 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC19.71■□□□□ 0.75
USP38Q8NB14 AP005117.1-201ENST00000584346 1413 ntBASIC19.71■□□□□ 0.75
USP38Q8NB14 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
USP38Q8NB14 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP38Q8NB14 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.71■□□□□ 0.75
USP38Q8NB14 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC19.71■□□□□ 0.75
USP38Q8NB14 ABCD1P5-201ENST00000445663 754 ntBASIC19.71■□□□□ 0.75
USP38Q8NB14 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP38Q8NB14 RBSN-204ENST00000449050 903 ntTSL 2 BASIC19.71■□□□□ 0.75
USP38Q8NB14 KRT18P3-201ENST00000451602 1288 ntBASIC19.71■□□□□ 0.75
USP38Q8NB14 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USP38Q8NB14 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC19.71■□□□□ 0.75
USP38Q8NB14 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC19.71■□□□□ 0.75
USP38Q8NB14 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.71■□□□□ 0.75
USP38Q8NB14 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC19.71■□□□□ 0.75
USP38Q8NB14 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC19.71■□□□□ 0.75
USP38Q8NB14 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP38Q8NB14 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP38Q8NB14 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP38Q8NB14 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USP38Q8NB14 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP38Q8NB14 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP38Q8NB14 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP38Q8NB14 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP38Q8NB14 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
USP38Q8NB14 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC19.71■□□□□ 0.75
USP38Q8NB14 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP38Q8NB14 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
USP38Q8NB14 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
USP38Q8NB14 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
USP38Q8NB14 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
USP38Q8NB14 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
USP38Q8NB14 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.7■□□□□ 0.74
USP38Q8NB14 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
USP38Q8NB14 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP38Q8NB14 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC19.7■□□□□ 0.74
USP38Q8NB14 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP38Q8NB14 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC19.7■□□□□ 0.74
USP38Q8NB14 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
USP38Q8NB14 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
USP38Q8NB14 CTNS-203ENST00000399306 803 ntTSL 3 BASIC19.7■□□□□ 0.74
USP38Q8NB14 AL591424.1-201ENST00000442569 1213 ntBASIC19.7■□□□□ 0.74
USP38Q8NB14 AC112698.1-201ENST00000510299 916 ntBASIC19.7■□□□□ 0.74
USP38Q8NB14 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.7■□□□□ 0.74
USP38Q8NB14 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP38Q8NB14 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC19.7■□□□□ 0.74
USP38Q8NB14 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.7■□□□□ 0.74
USP38Q8NB14 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC19.7■□□□□ 0.74
USP38Q8NB14 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC19.7■□□□□ 0.74
USP38Q8NB14 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP38Q8NB14 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP38Q8NB14 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP38Q8NB14 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19.7■□□□□ 0.74
USP38Q8NB14 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.7■□□□□ 0.74
USP38Q8NB14 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP38Q8NB14 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP38Q8NB14 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.7■□□□□ 0.74
USP38Q8NB14 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
USP38Q8NB14 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP38Q8NB14 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP38Q8NB14 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
USP38Q8NB14 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.7■□□□□ 0.74
USP38Q8NB14 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
USP38Q8NB14 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP38Q8NB14 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.69■□□□□ 0.74
USP38Q8NB14 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP38Q8NB14 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USP38Q8NB14 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP38Q8NB14 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
USP38Q8NB14 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP38Q8NB14 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
USP38Q8NB14 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC19.69■□□□□ 0.74
USP38Q8NB14 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
USP38Q8NB14 CD9-202ENST00000382515 1229 ntTSL 5 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms