Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 AL049757.1-201ENST00000616842 1596 ntBASIC18.11■□□□□ 0.49
RTL3Q8N8U3 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
RTL3Q8N8U3 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 DUSP5P1-201ENST00000441325 1139 ntBASIC18.1■□□□□ 0.49
RTL3Q8N8U3 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 AC109462.3-201ENST00000573934 613 ntBASIC18.1■□□□□ 0.49
RTL3Q8N8U3 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 AL732292.2-201ENST00000609649 430 ntBASIC18.1■□□□□ 0.49
RTL3Q8N8U3 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.1■□□□□ 0.49
RTL3Q8N8U3 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.09■□□□□ 0.49
RTL3Q8N8U3 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RTL3Q8N8U3 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RTL3Q8N8U3 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
RTL3Q8N8U3 KRT8P10-201ENST00000450021 1447 ntBASIC18.09■□□□□ 0.49
RTL3Q8N8U3 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
RTL3Q8N8U3 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RTL3Q8N8U3 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RTL3Q8N8U3 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.09■□□□□ 0.49
RTL3Q8N8U3 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RTL3Q8N8U3 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.09■□□□□ 0.49
RTL3Q8N8U3 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.09■□□□□ 0.49
RTL3Q8N8U3 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.09■□□□□ 0.49
RTL3Q8N8U3 AC091304.2-201ENST00000564639 760 ntBASIC18.09■□□□□ 0.49
RTL3Q8N8U3 AD001527.2-201ENST00000622994 785 ntBASIC18.09■□□□□ 0.49
RTL3Q8N8U3 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.09■□□□□ 0.49
RTL3Q8N8U3 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
RTL3Q8N8U3 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
RTL3Q8N8U3 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RTL3Q8N8U3 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
RTL3Q8N8U3 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RTL3Q8N8U3 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.09■□□□□ 0.49
RTL3Q8N8U3 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
RTL3Q8N8U3 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RTL3Q8N8U3 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RTL3Q8N8U3 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
RTL3Q8N8U3 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
RTL3Q8N8U3 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
RTL3Q8N8U3 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
RTL3Q8N8U3 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
RTL3Q8N8U3 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
RTL3Q8N8U3 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
RTL3Q8N8U3 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
RTL3Q8N8U3 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
RTL3Q8N8U3 AL353593.2-201ENST00000602529 1483 ntBASIC18.08■□□□□ 0.49
RTL3Q8N8U3 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms