Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC15.67■□□□□ 0.1
SKA3Q8IX90 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
SKA3Q8IX90 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
SKA3Q8IX90 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC15.67■□□□□ 0.1
SKA3Q8IX90 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC15.67■□□□□ 0.1
SKA3Q8IX90 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC15.67■□□□□ 0.1
SKA3Q8IX90 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SKA3Q8IX90 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SKA3Q8IX90 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SKA3Q8IX90 KRT18P1-202ENST00000452408 1331 ntBASIC15.67■□□□□ 0.1
SKA3Q8IX90 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SKA3Q8IX90 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SKA3Q8IX90 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SKA3Q8IX90 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SKA3Q8IX90 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SKA3Q8IX90 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
SKA3Q8IX90 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SKA3Q8IX90 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SKA3Q8IX90 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SKA3Q8IX90 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
SKA3Q8IX90 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SKA3Q8IX90 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SKA3Q8IX90 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SKA3Q8IX90 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SKA3Q8IX90 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
SKA3Q8IX90 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
SKA3Q8IX90 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
SKA3Q8IX90 AL845331.1-201ENST00000424978 1190 ntBASIC15.66■□□□□ 0.1
SKA3Q8IX90 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC15.66■□□□□ 0.1
SKA3Q8IX90 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC15.66■□□□□ 0.1
SKA3Q8IX90 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC15.66■□□□□ 0.1
SKA3Q8IX90 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SKA3Q8IX90 AC069148.1-201ENST00000608741 768 ntBASIC15.66■□□□□ 0.1
SKA3Q8IX90 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC15.66■□□□□ 0.1
SKA3Q8IX90 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SKA3Q8IX90 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.66■□□□□ 0.1
SKA3Q8IX90 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SKA3Q8IX90 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SKA3Q8IX90 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SKA3Q8IX90 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SKA3Q8IX90 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SKA3Q8IX90 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
SKA3Q8IX90 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
SKA3Q8IX90 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SKA3Q8IX90 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SKA3Q8IX90 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC15.65■□□□□ 0.1
SKA3Q8IX90 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SKA3Q8IX90 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SKA3Q8IX90 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SKA3Q8IX90 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SKA3Q8IX90 AC067852.2-201ENST00000590513 2313 ntBASIC15.65■□□□□ 0.1
SKA3Q8IX90 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SKA3Q8IX90 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SKA3Q8IX90 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SKA3Q8IX90 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SKA3Q8IX90 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SKA3Q8IX90 AP002383.4-201ENST00000442518 975 ntBASIC15.65■□□□□ 0.1
SKA3Q8IX90 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC15.65■□□□□ 0.1
SKA3Q8IX90 AC011840.4-201ENST00000578471 627 ntBASIC15.65■□□□□ 0.1
SKA3Q8IX90 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC15.65■□□□□ 0.1
SKA3Q8IX90 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
SKA3Q8IX90 AL353801.3-201ENST00000609898 542 ntBASIC15.65■□□□□ 0.1
SKA3Q8IX90 AC116407.2-201ENST00000613639 860 ntBASIC15.65■□□□□ 0.1
SKA3Q8IX90 AC134043.2-201ENST00000624206 2238 ntBASIC15.65■□□□□ 0.1
SKA3Q8IX90 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SKA3Q8IX90 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SKA3Q8IX90 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SKA3Q8IX90 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC15.65■□□□□ 0.1
SKA3Q8IX90 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
SKA3Q8IX90 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SKA3Q8IX90 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SKA3Q8IX90 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SKA3Q8IX90 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC15.65■□□□□ 0.1
SKA3Q8IX90 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC15.65■□□□□ 0.1
SKA3Q8IX90 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SKA3Q8IX90 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SKA3Q8IX90 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SKA3Q8IX90 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC15.65■□□□□ 0.1
SKA3Q8IX90 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC15.65■□□□□ 0.1
SKA3Q8IX90 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SKA3Q8IX90 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SKA3Q8IX90 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SKA3Q8IX90 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC15.64■□□□□ 0.09
SKA3Q8IX90 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SKA3Q8IX90 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC15.64■□□□□ 0.09
SKA3Q8IX90 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SKA3Q8IX90 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SKA3Q8IX90 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SKA3Q8IX90 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC15.64■□□□□ 0.09
SKA3Q8IX90 AC009949.1-201ENST00000623048 1830 ntBASIC15.64■□□□□ 0.09
SKA3Q8IX90 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SKA3Q8IX90 NME9-203ENST00000383180 2133 ntTSL 2 BASIC15.64■□□□□ 0.09
SKA3Q8IX90 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
SKA3Q8IX90 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SKA3Q8IX90 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SKA3Q8IX90 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
SKA3Q8IX90 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SKA3Q8IX90 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
SKA3Q8IX90 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SKA3Q8IX90 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms