Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
VPS13CQ709C8 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS13CQ709C8 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC14.6□□□□□ -0.07
VPS13CQ709C8 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC14.6□□□□□ -0.07
VPS13CQ709C8 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC14.59□□□□□ -0.07
VPS13CQ709C8 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
VPS13CQ709C8 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13CQ709C8 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS13CQ709C8 INGX-202ENST00000489074 768 ntBASIC14.59□□□□□ -0.07
VPS13CQ709C8 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS13CQ709C8 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC14.59□□□□□ -0.07
VPS13CQ709C8 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC14.59□□□□□ -0.07
VPS13CQ709C8 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS13CQ709C8 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
VPS13CQ709C8 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
VPS13CQ709C8 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13CQ709C8 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13CQ709C8 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13CQ709C8 HNRNPFP1-201ENST00000391730 1133 ntBASIC14.59□□□□□ -0.07
VPS13CQ709C8 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS13CQ709C8 AL805961.1-202ENST00000641562 540 ntBASIC14.59□□□□□ -0.07
VPS13CQ709C8 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13CQ709C8 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
VPS13CQ709C8 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS13CQ709C8 AC008677.1-201ENST00000519230 1561 ntBASIC14.59□□□□□ -0.07
VPS13CQ709C8 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13CQ709C8 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS13CQ709C8 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS13CQ709C8 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
VPS13CQ709C8 PMS2P4-201ENST00000412466 1052 ntBASIC14.59□□□□□ -0.07
VPS13CQ709C8 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
VPS13CQ709C8 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13CQ709C8 TAF8-206ENST00000472818 719 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS13CQ709C8 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
VPS13CQ709C8 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13CQ709C8 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC14.59□□□□□ -0.07
VPS13CQ709C8 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13CQ709C8 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13CQ709C8 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13CQ709C8 AC093503.3-201ENST00000624917 2352 ntBASIC14.59□□□□□ -0.07
VPS13CQ709C8 FST-202ENST00000396947 2538 ntTSL 5 BASIC14.59□□□□□ -0.07
VPS13CQ709C8 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
VPS13CQ709C8 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
VPS13CQ709C8 RPL30-202ENST00000396070 440 ntTSL 2 BASIC14.58□□□□□ -0.07
VPS13CQ709C8 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.07
VPS13CQ709C8 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC14.58□□□□□ -0.07
VPS13CQ709C8 AC055876.3-201ENST00000431496 288 ntBASIC14.58□□□□□ -0.07
VPS13CQ709C8 CD63-210ENST00000550776 870 ntTSL 5 BASIC14.58□□□□□ -0.07
VPS13CQ709C8 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.58□□□□□ -0.07
VPS13CQ709C8 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC14.58□□□□□ -0.07
VPS13CQ709C8 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
VPS13CQ709C8 AC138649.4-201ENST00000612222 287 ntBASIC14.58□□□□□ -0.07
VPS13CQ709C8 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.07
VPS13CQ709C8 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS13CQ709C8 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS13CQ709C8 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC14.58□□□□□ -0.08
VPS13CQ709C8 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS13CQ709C8 KLF4P1-201ENST00000412782 1185 ntBASIC14.58□□□□□ -0.08
VPS13CQ709C8 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VPS13CQ709C8 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC14.58□□□□□ -0.08
VPS13CQ709C8 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC14.58□□□□□ -0.08
VPS13CQ709C8 AC068137.2-201ENST00000605408 478 ntBASIC14.58□□□□□ -0.08
VPS13CQ709C8 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VPS13CQ709C8 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS13CQ709C8 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS13CQ709C8 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC14.58□□□□□ -0.08
VPS13CQ709C8 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
VPS13CQ709C8 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC14.58□□□□□ -0.08
VPS13CQ709C8 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
VPS13CQ709C8 AC004835.2-201ENST00000603762 682 ntBASIC14.58□□□□□ -0.08
VPS13CQ709C8 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
VPS13CQ709C8 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS13CQ709C8 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC14.58□□□□□ -0.08
VPS13CQ709C8 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS13CQ709C8 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13CQ709C8 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC14.57□□□□□ -0.08
VPS13CQ709C8 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13CQ709C8 AC122714.2-201ENST00000502787 707 ntBASIC14.57□□□□□ -0.08
VPS13CQ709C8 NOP2-220ENST00000545915 630 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS13CQ709C8 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC14.57□□□□□ -0.08
VPS13CQ709C8 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13CQ709C8 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC14.57□□□□□ -0.08
VPS13CQ709C8 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13CQ709C8 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC14.57□□□□□ -0.08
VPS13CQ709C8 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13CQ709C8 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13CQ709C8 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC14.57□□□□□ -0.08
VPS13CQ709C8 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC14.57□□□□□ -0.08
VPS13CQ709C8 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13CQ709C8 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13CQ709C8 AP002414.1-201ENST00000391405 1147 ntBASIC14.57□□□□□ -0.08
VPS13CQ709C8 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13CQ709C8 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13CQ709C8 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC14.57□□□□□ -0.08
VPS13CQ709C8 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC14.57□□□□□ -0.08
VPS13CQ709C8 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC14.57□□□□□ -0.08
VPS13CQ709C8 AC008667.4-201ENST00000607370 168 ntBASIC14.57□□□□□ -0.08
VPS13CQ709C8 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC14.57□□□□□ -0.08
VPS13CQ709C8 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS13CQ709C8 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms