Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 ENSA-206ENST00000361631 725 ntTSL 2 BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 AC009093.7-201ENST00000623853 1223 ntBASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 AC008761.3-201ENST00000624803 892 ntBASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 MMP17-203ENST00000535004 719 ntTSL 3 BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 DAD1-205ENST00000543337 501 ntTSL 3 BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 AC103564.2-201ENST00000432853 1299 ntBASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
VPS13DQ5THJ4 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 SPCS2P4-201ENST00000436160 681 ntBASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 AC107918.2-201ENST00000530817 355 ntBASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 AC004449.1-201ENST00000564240 433 ntBASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 AC004835.2-201ENST00000603762 682 ntBASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 BSG-215ENST00000618006 1329 ntTSL 2 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 AC015922.1-201ENST00000421102 1152 ntBASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 AC005034.1-201ENST00000426657 489 ntBASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 AL020996.1-203ENST00000536896 2307 ntBASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 SPDYE14P-201ENST00000442619 822 ntBASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 GAPDHP21-201ENST00000450301 1010 ntBASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 FO538757.1-201ENST00000623083 1397 ntBASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
VPS13DQ5THJ4 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 DDT-204ENST00000404092 805 ntTSL 3 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 NABP1-203ENST00000409510 843 ntTSL 5 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 RN7SL204P-201ENST00000582831 262 ntBASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 TUBB3P1-201ENST00000405796 1332 ntBASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC11.74□□□□□ -0.53
VPS13DQ5THJ4 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms