Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.75■□□□□ 0.59
USP41Q3LFD5 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
USP41Q3LFD5 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
USP41Q3LFD5 BX276092.7-203ENST00000637198 1536 ntBASIC18.74■□□□□ 0.59
USP41Q3LFD5 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
USP41Q3LFD5 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP41Q3LFD5 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
USP41Q3LFD5 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP41Q3LFD5 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP41Q3LFD5 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.74■□□□□ 0.59
USP41Q3LFD5 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
USP41Q3LFD5 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.74■□□□□ 0.59
USP41Q3LFD5 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP41Q3LFD5 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP41Q3LFD5 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP41Q3LFD5 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
USP41Q3LFD5 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.74■□□□□ 0.59
USP41Q3LFD5 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP41Q3LFD5 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.74■□□□□ 0.59
USP41Q3LFD5 UPF3AP3-201ENST00000420996 769 ntBASIC18.74■□□□□ 0.59
USP41Q3LFD5 AC108751.1-201ENST00000490852 363 ntBASIC18.74■□□□□ 0.59
USP41Q3LFD5 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
USP41Q3LFD5 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.74■□□□□ 0.59
USP41Q3LFD5 AC019129.2-201ENST00000609837 1235 ntBASIC18.74■□□□□ 0.59
USP41Q3LFD5 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP41Q3LFD5 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP41Q3LFD5 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.74■□□□□ 0.59
USP41Q3LFD5 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
USP41Q3LFD5 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.74■□□□□ 0.59
USP41Q3LFD5 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP41Q3LFD5 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.74■□□□□ 0.59
USP41Q3LFD5 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP41Q3LFD5 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
USP41Q3LFD5 NCF1C-201ENST00000438382 1427 ntBASIC18.74■□□□□ 0.59
USP41Q3LFD5 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.74■□□□□ 0.59
USP41Q3LFD5 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP41Q3LFD5 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
USP41Q3LFD5 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.73■□□□□ 0.59
USP41Q3LFD5 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP41Q3LFD5 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.73■□□□□ 0.59
USP41Q3LFD5 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.73■□□□□ 0.59
USP41Q3LFD5 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USP41Q3LFD5 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP41Q3LFD5 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USP41Q3LFD5 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.73■□□□□ 0.59
USP41Q3LFD5 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP41Q3LFD5 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USP41Q3LFD5 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP41Q3LFD5 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USP41Q3LFD5 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.73■□□□□ 0.59
USP41Q3LFD5 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USP41Q3LFD5 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.73■□□□□ 0.59
USP41Q3LFD5 DDX43P3-201ENST00000441064 443 ntBASIC18.73■□□□□ 0.59
USP41Q3LFD5 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.73■□□□□ 0.59
USP41Q3LFD5 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.73■□□□□ 0.59
USP41Q3LFD5 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.73■□□□□ 0.59
USP41Q3LFD5 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.73■□□□□ 0.59
USP41Q3LFD5 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.73■□□□□ 0.59
USP41Q3LFD5 AC109462.3-201ENST00000573934 613 ntBASIC18.73■□□□□ 0.59
USP41Q3LFD5 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.73■□□□□ 0.59
USP41Q3LFD5 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.73■□□□□ 0.59
USP41Q3LFD5 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC18.73■□□□□ 0.59
USP41Q3LFD5 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.73■□□□□ 0.59
USP41Q3LFD5 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.73■□□□□ 0.59
USP41Q3LFD5 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
USP41Q3LFD5 AC148477.5-201ENST00000625164 1645 ntBASIC18.73■□□□□ 0.59
USP41Q3LFD5 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP41Q3LFD5 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.73■□□□□ 0.59
USP41Q3LFD5 AC100803.2-201ENST00000562459 1963 ntBASIC18.73■□□□□ 0.59
USP41Q3LFD5 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP41Q3LFD5 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USP41Q3LFD5 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP41Q3LFD5 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
USP41Q3LFD5 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.73■□□□□ 0.59
USP41Q3LFD5 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USP41Q3LFD5 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP41Q3LFD5 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP41Q3LFD5 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.72■□□□□ 0.59
USP41Q3LFD5 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
USP41Q3LFD5 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.72■□□□□ 0.59
USP41Q3LFD5 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP41Q3LFD5 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
USP41Q3LFD5 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
USP41Q3LFD5 YBX2P1-201ENST00000394192 760 ntBASIC18.72■□□□□ 0.59
USP41Q3LFD5 DNAJB3-201ENST00000446806 729 ntBASIC18.72■□□□□ 0.59
USP41Q3LFD5 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.72■□□□□ 0.59
USP41Q3LFD5 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.72■□□□□ 0.59
USP41Q3LFD5 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.72■□□□□ 0.59
USP41Q3LFD5 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.72■□□□□ 0.59
USP41Q3LFD5 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.72■□□□□ 0.59
USP41Q3LFD5 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP41Q3LFD5 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
USP41Q3LFD5 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
USP41Q3LFD5 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
USP41Q3LFD5 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP41Q3LFD5 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
USP41Q3LFD5 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USP41Q3LFD5 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.72■□□□□ 0.59
USP41Q3LFD5 AC009949.1-201ENST00000623048 1830 ntBASIC18.72■□□□□ 0.59
USP41Q3LFD5 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms