Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.98■□□□□ 0.31
COL28A1Q2UY09 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 AC112777.1-201ENST00000540175 1423 ntBASIC16.97■□□□□ 0.31
COL28A1Q2UY09 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 AL390961.4-201ENST00000623958 2535 ntBASIC16.97■□□□□ 0.31
COL28A1Q2UY09 AL499627.1-201ENST00000569373 2188 ntBASIC16.97■□□□□ 0.31
COL28A1Q2UY09 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 REEP1-209ENST00000541910 969 ntTSL 2 BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 RBM7-207ENST00000544582 692 ntTSL 3 BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
COL28A1Q2UY09 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 AC093028.1-201ENST00000622998 982 ntBASIC16.96■□□□□ 0.31
COL28A1Q2UY09 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
COL28A1Q2UY09 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
COL28A1Q2UY09 INTS4P1-201ENST00000438455 1935 ntBASIC16.96■□□□□ 0.3
COL28A1Q2UY09 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
COL28A1Q2UY09 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms