Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
RNF4P78317 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.37■□□□□ 0.21
RNF4P78317 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.37■□□□□ 0.21
RNF4P78317 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.37■□□□□ 0.21
RNF4P78317 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
RNF4P78317 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
RNF4P78317 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.37■□□□□ 0.21
RNF4P78317 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.37■□□□□ 0.21
RNF4P78317 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF4P78317 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF4P78317 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF4P78317 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.37■□□□□ 0.21
RNF4P78317 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
RNF4P78317 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
RNF4P78317 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.36■□□□□ 0.21
RNF4P78317 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
RNF4P78317 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RNF4P78317 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RNF4P78317 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
RNF4P78317 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.36■□□□□ 0.21
RNF4P78317 SIRPAP1-201ENST00000448467 1770 ntBASIC16.36■□□□□ 0.21
RNF4P78317 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC16.36■□□□□ 0.21
RNF4P78317 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.36■□□□□ 0.21
RNF4P78317 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.36■□□□□ 0.21
RNF4P78317 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RNF4P78317 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RNF4P78317 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RNF4P78317 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RNF4P78317 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.36■□□□□ 0.21
RNF4P78317 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.36■□□□□ 0.21
RNF4P78317 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.36■□□□□ 0.21
RNF4P78317 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.36■□□□□ 0.21
RNF4P78317 AC106795.1-205ENST00000512851 1056 ntBASIC16.36■□□□□ 0.21
RNF4P78317 AF238378.1-201ENST00000526806 358 ntBASIC16.36■□□□□ 0.21
RNF4P78317 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
RNF4P78317 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.36■□□□□ 0.21
RNF4P78317 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RNF4P78317 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.36■□□□□ 0.21
RNF4P78317 AP001269.4-201ENST00000609611 512 ntBASIC16.36■□□□□ 0.21
RNF4P78317 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
RNF4P78317 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RNF4P78317 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.36■□□□□ 0.21
RNF4P78317 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RNF4P78317 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RNF4P78317 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
RNF4P78317 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.36■□□□□ 0.21
RNF4P78317 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
RNF4P78317 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.36■□□□□ 0.21
RNF4P78317 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RNF4P78317 AP005117.1-201ENST00000584346 1413 ntBASIC16.36■□□□□ 0.21
RNF4P78317 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
RNF4P78317 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
RNF4P78317 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.35■□□□□ 0.21
RNF4P78317 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RNF4P78317 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.35■□□□□ 0.21
RNF4P78317 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
RNF4P78317 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.35■□□□□ 0.21
RNF4P78317 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
RNF4P78317 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RNF4P78317 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RNF4P78317 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.35■□□□□ 0.21
RNF4P78317 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
RNF4P78317 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.35■□□□□ 0.21
RNF4P78317 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.35■□□□□ 0.21
RNF4P78317 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RNF4P78317 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RNF4P78317 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RNF4P78317 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.35■□□□□ 0.21
RNF4P78317 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.35■□□□□ 0.21
RNF4P78317 RBM17P3-201ENST00000417687 1192 ntBASIC16.35■□□□□ 0.21
RNF4P78317 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RNF4P78317 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.35■□□□□ 0.21
RNF4P78317 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.35■□□□□ 0.21
RNF4P78317 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.35■□□□□ 0.21
RNF4P78317 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.35■□□□□ 0.21
RNF4P78317 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
RNF4P78317 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RNF4P78317 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.35■□□□□ 0.21
RNF4P78317 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RNF4P78317 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RNF4P78317 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RNF4P78317 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
RNF4P78317 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RNF4P78317 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
RNF4P78317 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.35■□□□□ 0.21
RNF4P78317 AC106820.2-201ENST00000563775 3264 ntBASIC16.35■□□□□ 0.21
RNF4P78317 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.35■□□□□ 0.21
RNF4P78317 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.35■□□□□ 0.21
RNF4P78317 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
RNF4P78317 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
RNF4P78317 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.35■□□□□ 0.21
RNF4P78317 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
RNF4P78317 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.35■□□□□ 0.21
RNF4P78317 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.35■□□□□ 0.21
RNF4P78317 AC007613.1-201ENST00000572811 2597 ntBASIC16.34■□□□□ 0.21
RNF4P78317 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
RNF4P78317 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RNF4P78317 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.34■□□□□ 0.21
RNF4P78317 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RNF4P78317 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms