Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.43■□□□□ 0.38
LIMK1P53667 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIMK1P53667 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMK1P53667 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.43■□□□□ 0.38
LIMK1P53667 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC17.43■□□□□ 0.38
LIMK1P53667 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.43■□□□□ 0.38
LIMK1P53667 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.43■□□□□ 0.38
LIMK1P53667 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.43■□□□□ 0.38
LIMK1P53667 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.43■□□□□ 0.38
LIMK1P53667 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.43■□□□□ 0.38
LIMK1P53667 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMK1P53667 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIMK1P53667 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.43■□□□□ 0.38
LIMK1P53667 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.43■□□□□ 0.38
LIMK1P53667 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMK1P53667 SIGLEC16-201ENST00000599858 1437 ntBASIC17.43■□□□□ 0.38
LIMK1P53667 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMK1P53667 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.43■□□□□ 0.38
LIMK1P53667 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMK1P53667 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMK1P53667 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMK1P53667 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
LIMK1P53667 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.43■□□□□ 0.38
LIMK1P53667 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
LIMK1P53667 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LIMK1P53667 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMK1P53667 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMK1P53667 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMK1P53667 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
LIMK1P53667 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMK1P53667 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMK1P53667 PMPCAP1-201ENST00000508114 1576 ntBASIC17.42■□□□□ 0.38
LIMK1P53667 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.42■□□□□ 0.38
LIMK1P53667 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMK1P53667 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.42■□□□□ 0.38
LIMK1P53667 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
LIMK1P53667 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LIMK1P53667 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.42■□□□□ 0.38
LIMK1P53667 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMK1P53667 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.42■□□□□ 0.38
LIMK1P53667 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.42■□□□□ 0.38
LIMK1P53667 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.42■□□□□ 0.38
LIMK1P53667 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.42■□□□□ 0.38
LIMK1P53667 AL589182.2-201ENST00000619332 1049 ntBASIC17.42■□□□□ 0.38
LIMK1P53667 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMK1P53667 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMK1P53667 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
LIMK1P53667 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.42■□□□□ 0.38
LIMK1P53667 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LIMK1P53667 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMK1P53667 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMK1P53667 GPR89P-201ENST00000407924 1495 ntBASIC17.42■□□□□ 0.38
LIMK1P53667 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.42■□□□□ 0.38
LIMK1P53667 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.42■□□□□ 0.38
LIMK1P53667 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMK1P53667 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
LIMK1P53667 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
LIMK1P53667 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMK1P53667 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.41■□□□□ 0.38
LIMK1P53667 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
LIMK1P53667 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMK1P53667 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMK1P53667 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMK1P53667 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMK1P53667 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMK1P53667 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIMK1P53667 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.41■□□□□ 0.38
LIMK1P53667 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIMK1P53667 AL139400.1-201ENST00000366220 510 ntBASIC17.41■□□□□ 0.38
LIMK1P53667 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.41■□□□□ 0.38
LIMK1P53667 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.41■□□□□ 0.38
LIMK1P53667 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.41■□□□□ 0.38
LIMK1P53667 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.41■□□□□ 0.38
LIMK1P53667 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.41■□□□□ 0.38
LIMK1P53667 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIMK1P53667 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.41■□□□□ 0.38
LIMK1P53667 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17.41■□□□□ 0.38
LIMK1P53667 AL031432.2-201ENST00000566714 459 ntBASIC17.41■□□□□ 0.38
LIMK1P53667 AL928711.1-201ENST00000570165 459 ntBASIC17.41■□□□□ 0.38
LIMK1P53667 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC17.41■□□□□ 0.38
LIMK1P53667 AC093512.1-201ENST00000617969 520 ntBASIC17.41■□□□□ 0.38
LIMK1P53667 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMK1P53667 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
LIMK1P53667 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.41■□□□□ 0.38
LIMK1P53667 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.41■□□□□ 0.38
LIMK1P53667 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.41■□□□□ 0.38
LIMK1P53667 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMK1P53667 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
LIMK1P53667 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMK1P53667 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMK1P53667 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMK1P53667 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LIMK1P53667 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LIMK1P53667 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.4■□□□□ 0.38
LIMK1P53667 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMK1P53667 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMK1P53667 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMK1P53667 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LIMK1P53667 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LIMK1P53667 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms