Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL671277.2-201ENST00000458060 996 ntBASIC18.62■□□□□ 0.57
LIG3P49916 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.62■□□□□ 0.57
LIG3P49916 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIG3P49916 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.62■□□□□ 0.57
LIG3P49916 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LIG3P49916 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LIG3P49916 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIG3P49916 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.62■□□□□ 0.57
LIG3P49916 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.62■□□□□ 0.57
LIG3P49916 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.62■□□□□ 0.57
LIG3P49916 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIG3P49916 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIG3P49916 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LIG3P49916 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIG3P49916 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIG3P49916 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIG3P49916 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIG3P49916 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIG3P49916 MST1L-201ENST00000442552 2185 ntBASIC18.62■□□□□ 0.57
LIG3P49916 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC18.62■□□□□ 0.57
LIG3P49916 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC18.62■□□□□ 0.57
LIG3P49916 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIG3P49916 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIG3P49916 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIG3P49916 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
LIG3P49916 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIG3P49916 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
LIG3P49916 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC18.61■□□□□ 0.57
LIG3P49916 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
LIG3P49916 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIG3P49916 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIG3P49916 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
LIG3P49916 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC18.61■□□□□ 0.57
LIG3P49916 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
LIG3P49916 AL357033.4-201ENST00000617703 1807 ntBASIC18.61■□□□□ 0.57
LIG3P49916 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.61■□□□□ 0.57
LIG3P49916 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIG3P49916 AC034236.2-201ENST00000606662 1610 ntBASIC18.61■□□□□ 0.57
LIG3P49916 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIG3P49916 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIG3P49916 HOXB1-202ENST00000577092 1414 ntBASIC18.61■□□□□ 0.57
LIG3P49916 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIG3P49916 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.61■□□□□ 0.57
LIG3P49916 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.61■□□□□ 0.57
LIG3P49916 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIG3P49916 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.61■□□□□ 0.57
LIG3P49916 AC034232.1-201ENST00000506026 1064 ntBASIC18.61■□□□□ 0.57
LIG3P49916 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.61■□□□□ 0.57
LIG3P49916 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
LIG3P49916 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.61■□□□□ 0.57
LIG3P49916 AC083906.6-201ENST00000641366 219 ntBASIC18.61■□□□□ 0.57
LIG3P49916 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.61■□□□□ 0.57
LIG3P49916 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIG3P49916 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIG3P49916 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC18.61■□□□□ 0.57
LIG3P49916 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.61■□□□□ 0.57
LIG3P49916 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.61■□□□□ 0.57
LIG3P49916 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC18.61■□□□□ 0.57
LIG3P49916 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
LIG3P49916 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.61■□□□□ 0.57
LIG3P49916 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
LIG3P49916 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.61■□□□□ 0.57
LIG3P49916 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.6■□□□□ 0.57
LIG3P49916 LINC00554-201ENST00000564841 3011 ntBASIC18.6■□□□□ 0.57
LIG3P49916 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIG3P49916 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG3P49916 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.6■□□□□ 0.57
LIG3P49916 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG3P49916 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.6■□□□□ 0.57
LIG3P49916 MTMR9LP-203ENST00000426597 1545 ntBASIC18.6■□□□□ 0.57
LIG3P49916 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LIG3P49916 KRT8P7-201ENST00000533003 1432 ntBASIC18.6■□□□□ 0.57
LIG3P49916 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG3P49916 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG3P49916 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG3P49916 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG3P49916 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIG3P49916 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIG3P49916 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LIG3P49916 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.6■□□□□ 0.57
LIG3P49916 AC112907.2-201ENST00000448639 330 ntBASIC18.6■□□□□ 0.57
LIG3P49916 RASA4DP-201ENST00000460726 1199 ntBASIC18.6■□□□□ 0.57
LIG3P49916 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.6■□□□□ 0.57
LIG3P49916 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.6■□□□□ 0.57
LIG3P49916 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG3P49916 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG3P49916 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.6■□□□□ 0.57
LIG3P49916 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.6■□□□□ 0.57
LIG3P49916 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
LIG3P49916 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.6■□□□□ 0.57
LIG3P49916 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG3P49916 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
LIG3P49916 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG3P49916 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.6■□□□□ 0.57
LIG3P49916 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
LIG3P49916 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.6■□□□□ 0.57
LIG3P49916 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LIG3P49916 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
LIG3P49916 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
LIG3P49916 FER1L4-210ENST00000615531 5998 ntBASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms