Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CTCFP49711 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC20.37■□□□□ 0.85
CTCFP49711 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CTCFP49711 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CTCFP49711 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTCFP49711 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CTCFP49711 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
CTCFP49711 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTCFP49711 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.36■□□□□ 0.85
CTCFP49711 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CTCFP49711 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTCFP49711 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTCFP49711 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTCFP49711 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.36■□□□□ 0.85
CTCFP49711 ADM-208ENST00000534464 1640 ntTSL 2 BASIC20.36■□□□□ 0.85
CTCFP49711 AC018445.3-201ENST00000624177 1945 ntBASIC20.36■□□□□ 0.85
CTCFP49711 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CTCFP49711 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CTCFP49711 AC004945.1-201ENST00000416738 983 ntBASIC20.36■□□□□ 0.85
CTCFP49711 AL020989.1-201ENST00000422979 469 ntBASIC20.36■□□□□ 0.85
CTCFP49711 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC20.36■□□□□ 0.85
CTCFP49711 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC20.36■□□□□ 0.85
CTCFP49711 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC20.36■□□□□ 0.85
CTCFP49711 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC20.36■□□□□ 0.85
CTCFP49711 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC20.36■□□□□ 0.85
CTCFP49711 KRT18P41-201ENST00000518924 1277 ntBASIC20.36■□□□□ 0.85
CTCFP49711 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC20.36■□□□□ 0.85
CTCFP49711 OR7E47P-204ENST00000575924 449 ntBASIC20.36■□□□□ 0.85
CTCFP49711 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC20.36■□□□□ 0.85
CTCFP49711 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC20.36■□□□□ 0.85
CTCFP49711 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTCFP49711 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTCFP49711 TBC1D3P5-201ENST00000579401 1545 ntBASIC20.36■□□□□ 0.85
CTCFP49711 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.36■□□□□ 0.85
CTCFP49711 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.36■□□□□ 0.85
CTCFP49711 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTCFP49711 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC20.36■□□□□ 0.85
CTCFP49711 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CTCFP49711 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTCFP49711 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTCFP49711 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
CTCFP49711 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CTCFP49711 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
CTCFP49711 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTCFP49711 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
CTCFP49711 Z82202.1-201ENST00000623446 1880 ntBASIC20.35■□□□□ 0.85
CTCFP49711 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTCFP49711 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CTCFP49711 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
CTCFP49711 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CTCFP49711 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
CTCFP49711 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTCFP49711 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTCFP49711 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTCFP49711 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTCFP49711 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC20.35■□□□□ 0.85
CTCFP49711 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTCFP49711 AC092658.1-201ENST00000505836 891 ntBASIC20.35■□□□□ 0.85
CTCFP49711 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CTCFP49711 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTCFP49711 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC20.35■□□□□ 0.85
CTCFP49711 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC20.35■□□□□ 0.85
CTCFP49711 TSFM-210ENST00000550559 897 ntTSL 5 BASIC20.35■□□□□ 0.85
CTCFP49711 AC010336.2-201ENST00000564226 506 ntBASIC20.35■□□□□ 0.85
CTCFP49711 AL158211.3-201ENST00000607385 239 ntBASIC20.35■□□□□ 0.85
CTCFP49711 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC20.35■□□□□ 0.85
CTCFP49711 GGTLC5P-201ENST00000617623 998 ntBASIC20.35■□□□□ 0.85
CTCFP49711 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTCFP49711 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTCFP49711 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
CTCFP49711 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC20.35■□□□□ 0.85
CTCFP49711 AC009102.3-201ENST00000623118 1491 ntBASIC20.35■□□□□ 0.85
CTCFP49711 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CTCFP49711 LETM1P2-201ENST00000597330 2178 ntBASIC20.35■□□□□ 0.85
CTCFP49711 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CTCFP49711 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CTCFP49711 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC20.35■□□□□ 0.85
CTCFP49711 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTCFP49711 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC20.34■□□□□ 0.85
CTCFP49711 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CTCFP49711 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.34■□□□□ 0.85
CTCFP49711 AC006116.8-202ENST00000587620 1550 ntBASIC20.34■□□□□ 0.85
CTCFP49711 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC20.34■□□□□ 0.85
CTCFP49711 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTCFP49711 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTCFP49711 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.34■□□□□ 0.85
CTCFP49711 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTCFP49711 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.34■□□□□ 0.85
CTCFP49711 KRT18P32-201ENST00000424695 1287 ntBASIC20.34■□□□□ 0.85
CTCFP49711 HLA-DPB2-205ENST00000435074 1188 ntBASIC20.34■□□□□ 0.85
CTCFP49711 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC20.34■□□□□ 0.85
CTCFP49711 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC20.34■□□□□ 0.85
CTCFP49711 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC20.34■□□□□ 0.85
CTCFP49711 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC20.34■□□□□ 0.85
CTCFP49711 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTCFP49711 Six3os1_5.1-201ENST00000611000 271 ntBASIC20.34■□□□□ 0.85
CTCFP49711 AC009118.2-201ENST00000613275 655 ntBASIC20.34■□□□□ 0.85
CTCFP49711 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTCFP49711 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.34■□□□□ 0.85
CTCFP49711 TEX21P-204ENST00000641479 1693 ntBASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms