Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CCNFP41002 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CCNFP41002 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCNFP41002 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
CCNFP41002 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCNFP41002 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CCNFP41002 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CCNFP41002 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCNFP41002 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCNFP41002 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.79■□□□□ 0.44
CCNFP41002 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCNFP41002 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CCNFP41002 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCNFP41002 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCNFP41002 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CCNFP41002 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.79■□□□□ 0.44
CCNFP41002 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCNFP41002 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CCNFP41002 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCNFP41002 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCNFP41002 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CCNFP41002 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCNFP41002 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCNFP41002 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCNFP41002 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CCNFP41002 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCNFP41002 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.79■□□□□ 0.44
CCNFP41002 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.79■□□□□ 0.44
CCNFP41002 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCNFP41002 NME3-204ENST00000563498 920 ntTSL 2 BASIC17.79■□□□□ 0.44
CCNFP41002 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.79■□□□□ 0.44
CCNFP41002 AC079602.3-201ENST00000623931 403 ntBASIC17.79■□□□□ 0.44
CCNFP41002 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCNFP41002 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
CCNFP41002 KRT89P-201ENST00000620027 1478 ntBASIC17.79■□□□□ 0.44
CCNFP41002 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCNFP41002 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.79■□□□□ 0.44
CCNFP41002 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CCNFP41002 AC009949.1-201ENST00000623048 1830 ntBASIC17.79■□□□□ 0.44
CCNFP41002 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.79■□□□□ 0.44
CCNFP41002 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CCNFP41002 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNFP41002 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNFP41002 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCNFP41002 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.78■□□□□ 0.44
CCNFP41002 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNFP41002 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.78■□□□□ 0.44
CCNFP41002 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNFP41002 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNFP41002 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNFP41002 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNFP41002 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.78■□□□□ 0.44
CCNFP41002 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CCNFP41002 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.78■□□□□ 0.44
CCNFP41002 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNFP41002 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.78■□□□□ 0.44
CCNFP41002 AC024563.2-201ENST00000603282 481 ntBASIC17.78■□□□□ 0.44
CCNFP41002 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.78■□□□□ 0.44
CCNFP41002 AL590326.2-201ENST00000625139 305 ntBASIC17.78■□□□□ 0.44
CCNFP41002 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.78■□□□□ 0.44
CCNFP41002 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
CCNFP41002 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CCNFP41002 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.78■□□□□ 0.44
CCNFP41002 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNFP41002 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNFP41002 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNFP41002 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.78■□□□□ 0.44
CCNFP41002 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CCNFP41002 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.78■□□□□ 0.44
CCNFP41002 CICP6-201ENST00000457191 2729 ntBASIC17.78■□□□□ 0.44
CCNFP41002 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
CCNFP41002 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.77■□□□□ 0.44
CCNFP41002 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
CCNFP41002 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCNFP41002 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.77■□□□□ 0.44
CCNFP41002 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCNFP41002 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CCNFP41002 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCNFP41002 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCNFP41002 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCNFP41002 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.77■□□□□ 0.44
CCNFP41002 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCNFP41002 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCNFP41002 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.77■□□□□ 0.44
CCNFP41002 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCNFP41002 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.77■□□□□ 0.44
CCNFP41002 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
CCNFP41002 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.77■□□□□ 0.44
CCNFP41002 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCNFP41002 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.77■□□□□ 0.44
CCNFP41002 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
CCNFP41002 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.77■□□□□ 0.44
CCNFP41002 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCNFP41002 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCNFP41002 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCNFP41002 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CCNFP41002 HBZP1-201ENST00000354915 429 ntBASIC17.77■□□□□ 0.44
CCNFP41002 DDX43P3-201ENST00000441064 443 ntBASIC17.77■□□□□ 0.44
CCNFP41002 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CCNFP41002 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms