Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 HNRNPDP1-201ENST00000439535 754 ntBASIC16.18■□□□□ 0.18
RFC3P40938 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.18■□□□□ 0.18
RFC3P40938 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.18■□□□□ 0.18
RFC3P40938 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.18■□□□□ 0.18
RFC3P40938 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.18■□□□□ 0.18
RFC3P40938 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.18■□□□□ 0.18
RFC3P40938 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
RFC3P40938 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.18■□□□□ 0.18
RFC3P40938 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
RFC3P40938 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
RFC3P40938 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
RFC3P40938 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.18■□□□□ 0.18
RFC3P40938 IL9RP2-201ENST00000423948 1312 ntBASIC16.18■□□□□ 0.18
RFC3P40938 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.18■□□□□ 0.18
RFC3P40938 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFC3P40938 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFC3P40938 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
RFC3P40938 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFC3P40938 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.17■□□□□ 0.18
RFC3P40938 AC100803.2-201ENST00000562459 1963 ntBASIC16.17■□□□□ 0.18
RFC3P40938 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
RFC3P40938 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFC3P40938 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFC3P40938 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFC3P40938 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFC3P40938 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFC3P40938 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFC3P40938 FAM220CP-201ENST00000395253 831 ntBASIC16.17■□□□□ 0.18
RFC3P40938 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFC3P40938 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
RFC3P40938 SCARNA2-201ENST00000458748 420 ntBASIC16.17■□□□□ 0.18
RFC3P40938 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.17■□□□□ 0.18
RFC3P40938 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFC3P40938 SLC25A1P1-201ENST00000528351 927 ntBASIC16.17■□□□□ 0.18
RFC3P40938 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFC3P40938 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.17■□□□□ 0.18
RFC3P40938 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.17■□□□□ 0.18
RFC3P40938 MIR7706-201ENST00000613747 67 ntBASIC16.17■□□□□ 0.18
RFC3P40938 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
RFC3P40938 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.17■□□□□ 0.18
RFC3P40938 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
RFC3P40938 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.17■□□□□ 0.18
RFC3P40938 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.17■□□□□ 0.18
RFC3P40938 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
RFC3P40938 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFC3P40938 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFC3P40938 AC090340.1-201ENST00000620778 4980 ntBASIC16.17■□□□□ 0.18
RFC3P40938 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFC3P40938 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFC3P40938 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFC3P40938 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.17■□□□□ 0.18
RFC3P40938 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
RFC3P40938 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
RFC3P40938 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFC3P40938 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.17■□□□□ 0.18
RFC3P40938 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
RFC3P40938 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
RFC3P40938 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFC3P40938 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RFC3P40938 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RFC3P40938 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFC3P40938 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC16.16■□□□□ 0.18
RFC3P40938 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFC3P40938 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFC3P40938 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFC3P40938 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.16■□□□□ 0.18
RFC3P40938 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFC3P40938 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFC3P40938 AC243591.1-201ENST00000452967 1364 ntBASIC16.16■□□□□ 0.18
RFC3P40938 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFC3P40938 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.16■□□□□ 0.18
RFC3P40938 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFC3P40938 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFC3P40938 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFC3P40938 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
RFC3P40938 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RFC3P40938 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.16■□□□□ 0.18
RFC3P40938 RPS2P1-201ENST00000434010 821 ntBASIC16.16■□□□□ 0.18
RFC3P40938 AC018712.1-201ENST00000455767 687 ntBASIC16.16■□□□□ 0.18
RFC3P40938 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.16■□□□□ 0.18
RFC3P40938 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.16■□□□□ 0.18
RFC3P40938 BX640515.1-201ENST00000617215 977 ntBASIC16.16■□□□□ 0.18
RFC3P40938 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
RFC3P40938 AF228730.7-201ENST00000641842 219 ntBASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms