Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC21.02■□□□□ 0.96
COL4A5P29400 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC21.02■□□□□ 0.96
COL4A5P29400 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL4A5P29400 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC21.02■□□□□ 0.96
COL4A5P29400 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL4A5P29400 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL4A5P29400 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL4A5P29400 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL4A5P29400 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC21.02■□□□□ 0.96
COL4A5P29400 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC21.02■□□□□ 0.96
COL4A5P29400 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL4A5P29400 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.02■□□□□ 0.96
COL4A5P29400 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL4A5P29400 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.02■□□□□ 0.96
COL4A5P29400 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
COL4A5P29400 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.95
COL4A5P29400 METTL26-204ENST00000397665 558 ntTSL 2 BASIC21.02■□□□□ 0.95
COL4A5P29400 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC21.02■□□□□ 0.95
COL4A5P29400 AC005225.4-201ENST00000557330 545 ntBASIC21.02■□□□□ 0.95
COL4A5P29400 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC21.02■□□□□ 0.95
COL4A5P29400 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
COL4A5P29400 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC21.02■□□□□ 0.95
COL4A5P29400 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
COL4A5P29400 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
COL4A5P29400 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
COL4A5P29400 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A5P29400 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A5P29400 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A5P29400 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC21.01■□□□□ 0.95
COL4A5P29400 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A5P29400 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A5P29400 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A5P29400 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
COL4A5P29400 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A5P29400 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC21.01■□□□□ 0.95
COL4A5P29400 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A5P29400 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A5P29400 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A5P29400 HNRNPFP1-201ENST00000391730 1133 ntBASIC21.01■□□□□ 0.95
COL4A5P29400 CENPM-205ENST00000404067 905 ntTSL 3 BASIC21.01■□□□□ 0.95
COL4A5P29400 AC055876.3-201ENST00000431496 288 ntBASIC21.01■□□□□ 0.95
COL4A5P29400 MEIS3P1-201ENST00000495167 958 ntBASIC21.01■□□□□ 0.95
COL4A5P29400 AC079140.1-201ENST00000508039 487 ntBASIC21.01■□□□□ 0.95
COL4A5P29400 INO80E-210ENST00000567705 880 ntTSL 3 BASIC21.01■□□□□ 0.95
COL4A5P29400 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A5P29400 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A5P29400 AC138649.4-201ENST00000612222 287 ntBASIC21.01■□□□□ 0.95
COL4A5P29400 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC21.01■□□□□ 0.95
COL4A5P29400 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC21.01■□□□□ 0.95
COL4A5P29400 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
COL4A5P29400 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A5P29400 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC21.01■□□□□ 0.95
COL4A5P29400 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A5P29400 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
COL4A5P29400 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL4A5P29400 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
COL4A5P29400 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC21.01■□□□□ 0.95
COL4A5P29400 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
COL4A5P29400 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL4A5P29400 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL4A5P29400 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL4A5P29400 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC21■□□□□ 0.95
COL4A5P29400 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
COL4A5P29400 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC21■□□□□ 0.95
COL4A5P29400 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
COL4A5P29400 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC21■□□□□ 0.95
COL4A5P29400 WRB-204ENST00000398753 699 ntTSL 3 BASIC21■□□□□ 0.95
COL4A5P29400 SPDYE11-202ENST00000450699 704 ntBASIC21■□□□□ 0.95
COL4A5P29400 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC21■□□□□ 0.95
COL4A5P29400 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC21■□□□□ 0.95
COL4A5P29400 AL135744.1-201ENST00000565098 629 ntBASIC21■□□□□ 0.95
COL4A5P29400 SPDYE9P-201ENST00000570642 692 ntBASIC21■□□□□ 0.95
COL4A5P29400 SPDYE10P-202ENST00000612005 668 ntBASIC21■□□□□ 0.95
COL4A5P29400 SPDYE8P-202ENST00000612377 668 ntBASIC21■□□□□ 0.95
COL4A5P29400 AP001059.3-201ENST00000619053 235 ntBASIC21■□□□□ 0.95
COL4A5P29400 HFE2-206ENST00000634927 506 ntTSL 4 BASIC21■□□□□ 0.95
COL4A5P29400 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL4A5P29400 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL4A5P29400 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
COL4A5P29400 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC21■□□□□ 0.95
COL4A5P29400 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC21■□□□□ 0.95
COL4A5P29400 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC21■□□□□ 0.95
COL4A5P29400 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.99■□□□□ 0.95
COL4A5P29400 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A5P29400 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A5P29400 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC20.99■□□□□ 0.95
COL4A5P29400 CNN2P2-201ENST00000443536 909 ntBASIC20.99■□□□□ 0.95
COL4A5P29400 CNN2P3-201ENST00000450201 906 ntBASIC20.99■□□□□ 0.95
COL4A5P29400 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC20.99■□□□□ 0.95
COL4A5P29400 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC20.99■□□□□ 0.95
COL4A5P29400 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
COL4A5P29400 AL136317.3-201ENST00000618497 906 ntBASIC20.99■□□□□ 0.95
COL4A5P29400 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A5P29400 HARS-203ENST00000431330 1774 ntTSL 2 BASIC20.99■□□□□ 0.95
COL4A5P29400 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL4A5P29400 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
COL4A5P29400 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
COL4A5P29400 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
COL4A5P29400 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.99■□□□□ 0.95
COL4A5P29400 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms