Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.78■□□□□ 0.44
PTPN4P29074 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
PTPN4P29074 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN4P29074 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN4P29074 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.78■□□□□ 0.44
PTPN4P29074 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN4P29074 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.78■□□□□ 0.44
PTPN4P29074 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN4P29074 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.78■□□□□ 0.44
PTPN4P29074 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.78■□□□□ 0.44
PTPN4P29074 PCDHB19P-201ENST00000570871 2371 ntBASIC17.77■□□□□ 0.44
PTPN4P29074 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN4P29074 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN4P29074 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN4P29074 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.77■□□□□ 0.44
PTPN4P29074 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN4P29074 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN4P29074 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN4P29074 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN4P29074 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.77■□□□□ 0.44
PTPN4P29074 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN4P29074 PHGDH-209ENST00000641074 1780 ntBASIC17.77■□□□□ 0.44
PTPN4P29074 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.77■□□□□ 0.44
PTPN4P29074 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN4P29074 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN4P29074 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN4P29074 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.77■□□□□ 0.44
PTPN4P29074 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC17.77■□□□□ 0.44
PTPN4P29074 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
PTPN4P29074 ZNF444P1-201ENST00000559497 298 ntBASIC17.77■□□□□ 0.44
PTPN4P29074 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN4P29074 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.77■□□□□ 0.44
PTPN4P29074 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
PTPN4P29074 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PTPN4P29074 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
PTPN4P29074 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.77■□□□□ 0.43
PTPN4P29074 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.77■□□□□ 0.43
PTPN4P29074 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.77■□□□□ 0.43
PTPN4P29074 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PTPN4P29074 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PTPN4P29074 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.77■□□□□ 0.43
PTPN4P29074 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.77■□□□□ 0.43
PTPN4P29074 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
PTPN4P29074 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
PTPN4P29074 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
PTPN4P29074 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PTPN4P29074 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN4P29074 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN4P29074 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
PTPN4P29074 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
PTPN4P29074 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN4P29074 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN4P29074 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
PTPN4P29074 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN4P29074 AL162727.3-201ENST00000635661 2787 ntBASIC17.76■□□□□ 0.43
PTPN4P29074 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.76■□□□□ 0.43
PTPN4P29074 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN4P29074 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.76■□□□□ 0.43
PTPN4P29074 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN4P29074 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.76■□□□□ 0.43
PTPN4P29074 LINC01311-201ENST00000565162 1445 ntBASIC17.76■□□□□ 0.43
PTPN4P29074 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN4P29074 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN4P29074 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN4P29074 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN4P29074 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.76■□□□□ 0.43
PTPN4P29074 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN4P29074 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN4P29074 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.76■□□□□ 0.43
PTPN4P29074 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.76■□□□□ 0.43
PTPN4P29074 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.76■□□□□ 0.43
PTPN4P29074 HYMAI.1-201ENST00000620949 238 ntBASIC17.76■□□□□ 0.43
PTPN4P29074 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN4P29074 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.76■□□□□ 0.43
PTPN4P29074 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN4P29074 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN4P29074 KRT18P55-202ENST00000578578 1546 ntBASIC17.76■□□□□ 0.43
PTPN4P29074 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN4P29074 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.76■□□□□ 0.43
PTPN4P29074 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
PTPN4P29074 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN4P29074 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN4P29074 CICP6-201ENST00000457191 2729 ntBASIC17.76■□□□□ 0.43
PTPN4P29074 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN4P29074 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN4P29074 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.76■□□□□ 0.43
PTPN4P29074 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.76■□□□□ 0.43
PTPN4P29074 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.76■□□□□ 0.43
PTPN4P29074 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN4P29074 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN4P29074 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN4P29074 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.75■□□□□ 0.43
PTPN4P29074 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN4P29074 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN4P29074 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN4P29074 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN4P29074 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.75■□□□□ 0.43
PTPN4P29074 GMCL1P1-201ENST00000463439 1581 ntBASIC17.75■□□□□ 0.43
PTPN4P29074 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.75■□□□□ 0.43
PTPN4P29074 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms