Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 CCS-201ENST00000310190 942 ntTSL 5 BASIC20.44■□□□□ 0.86
CTDNEP1O95476 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CTDNEP1O95476 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTDNEP1O95476 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC20.44■□□□□ 0.86
CTDNEP1O95476 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.44■□□□□ 0.86
CTDNEP1O95476 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC20.44■□□□□ 0.86
CTDNEP1O95476 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CTDNEP1O95476 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
CTDNEP1O95476 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTDNEP1O95476 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.44■□□□□ 0.86
CTDNEP1O95476 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC20.44■□□□□ 0.86
CTDNEP1O95476 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC20.44■□□□□ 0.86
CTDNEP1O95476 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CTDNEP1O95476 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTDNEP1O95476 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC20.44■□□□□ 0.86
CTDNEP1O95476 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CTDNEP1O95476 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
CTDNEP1O95476 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTDNEP1O95476 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CTDNEP1O95476 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CTDNEP1O95476 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
CTDNEP1O95476 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CTDNEP1O95476 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CTDNEP1O95476 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CTDNEP1O95476 AC116353.5-201ENST00000638148 1699 ntBASIC20.43■□□□□ 0.86
CTDNEP1O95476 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CTDNEP1O95476 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.43■□□□□ 0.86
CTDNEP1O95476 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC20.43■□□□□ 0.86
CTDNEP1O95476 IGHV3-47-201ENST00000425060 335 ntBASIC20.43■□□□□ 0.86
CTDNEP1O95476 TOB2P1-201ENST00000469761 992 ntBASIC20.43■□□□□ 0.86
CTDNEP1O95476 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.43■□□□□ 0.86
CTDNEP1O95476 CDV3-207ENST00000508481 661 ntTSL 3 BASIC20.43■□□□□ 0.86
CTDNEP1O95476 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.43■□□□□ 0.86
CTDNEP1O95476 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC20.43■□□□□ 0.86
CTDNEP1O95476 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CTDNEP1O95476 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CTDNEP1O95476 AC010331.1-201ENST00000611423 582 ntBASIC20.43■□□□□ 0.86
CTDNEP1O95476 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CTDNEP1O95476 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CTDNEP1O95476 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CTDNEP1O95476 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC20.43■□□□□ 0.86
CTDNEP1O95476 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CTDNEP1O95476 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
CTDNEP1O95476 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
CTDNEP1O95476 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC20.42■□□□□ 0.86
CTDNEP1O95476 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
CTDNEP1O95476 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC20.42■□□□□ 0.86
CTDNEP1O95476 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 ABR-204ENST00000543210 1049 ntTSL 2 BASIC20.42■□□□□ 0.86
CTDNEP1O95476 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC20.42■□□□□ 0.86
CTDNEP1O95476 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.42■□□□□ 0.86
CTDNEP1O95476 BNIP3P18-201ENST00000593976 575 ntBASIC20.42■□□□□ 0.86
CTDNEP1O95476 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC20.42■□□□□ 0.86
CTDNEP1O95476 AC011467.2-201ENST00000598425 242 ntBASIC20.42■□□□□ 0.86
CTDNEP1O95476 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC20.42■□□□□ 0.86
CTDNEP1O95476 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
CTDNEP1O95476 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC20.42■□□□□ 0.86
CTDNEP1O95476 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.42■□□□□ 0.86
CTDNEP1O95476 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.42■□□□□ 0.86
CTDNEP1O95476 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC20.42■□□□□ 0.86
CTDNEP1O95476 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CTDNEP1O95476 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC20.41■□□□□ 0.86
CTDNEP1O95476 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC20.41■□□□□ 0.86
CTDNEP1O95476 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CTDNEP1O95476 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CTDNEP1O95476 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC20.41■□□□□ 0.86
CTDNEP1O95476 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CTDNEP1O95476 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CTDNEP1O95476 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CTDNEP1O95476 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CTDNEP1O95476 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CTDNEP1O95476 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC20.41■□□□□ 0.86
CTDNEP1O95476 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CTDNEP1O95476 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CTDNEP1O95476 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CTDNEP1O95476 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CTDNEP1O95476 AC009053.2-201ENST00000563701 2365 ntBASIC20.41■□□□□ 0.86
CTDNEP1O95476 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms