Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC20.58■□□□□ 0.89
PRPF40AO75400 FLJ38576-201ENST00000623820 2459 ntBASIC20.58■□□□□ 0.89
PRPF40AO75400 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PRPF40AO75400 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PRPF40AO75400 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PRPF40AO75400 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.58■□□□□ 0.89
PRPF40AO75400 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.58■□□□□ 0.89
PRPF40AO75400 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC20.58■□□□□ 0.89
PRPF40AO75400 MIR3180-4-201ENST00000582223 153 ntBASIC20.58■□□□□ 0.89
PRPF40AO75400 LINC01451-201ENST00000623792 534 ntBASIC20.58■□□□□ 0.89
PRPF40AO75400 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.58■□□□□ 0.88
PRPF40AO75400 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PRPF40AO75400 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PRPF40AO75400 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.88
PRPF40AO75400 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PRPF40AO75400 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
PRPF40AO75400 CICP6-201ENST00000457191 2729 ntBASIC20.58■□□□□ 0.88
PRPF40AO75400 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC20.58■□□□□ 0.88
PRPF40AO75400 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PRPF40AO75400 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC20.58■□□□□ 0.88
PRPF40AO75400 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC20.57■□□□□ 0.88
PRPF40AO75400 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
PRPF40AO75400 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC20.57■□□□□ 0.88
PRPF40AO75400 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
PRPF40AO75400 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
PRPF40AO75400 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
PRPF40AO75400 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PRPF40AO75400 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PRPF40AO75400 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PRPF40AO75400 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PRPF40AO75400 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PRPF40AO75400 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PRPF40AO75400 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PRPF40AO75400 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PRPF40AO75400 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC20.57■□□□□ 0.88
PRPF40AO75400 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.57■□□□□ 0.88
PRPF40AO75400 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PRPF40AO75400 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
PRPF40AO75400 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PRPF40AO75400 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PRPF40AO75400 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PRPF40AO75400 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
PRPF40AO75400 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PRPF40AO75400 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PRPF40AO75400 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
PRPF40AO75400 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PRPF40AO75400 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
PRPF40AO75400 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
PRPF40AO75400 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
PRPF40AO75400 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
PRPF40AO75400 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PRPF40AO75400 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF40AO75400 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF40AO75400 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF40AO75400 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
PRPF40AO75400 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC20.56■□□□□ 0.88
PRPF40AO75400 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC20.56■□□□□ 0.88
PRPF40AO75400 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC20.56■□□□□ 0.88
PRPF40AO75400 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
PRPF40AO75400 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
PRPF40AO75400 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC20.56■□□□□ 0.88
PRPF40AO75400 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF40AO75400 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF40AO75400 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.56■□□□□ 0.88
PRPF40AO75400 AL390955.1-201ENST00000428694 934 ntBASIC20.56■□□□□ 0.88
PRPF40AO75400 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.56■□□□□ 0.88
PRPF40AO75400 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.56■□□□□ 0.88
PRPF40AO75400 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC20.56■□□□□ 0.88
PRPF40AO75400 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.56■□□□□ 0.88
PRPF40AO75400 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
PRPF40AO75400 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC20.56■□□□□ 0.88
PRPF40AO75400 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.56■□□□□ 0.88
PRPF40AO75400 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.56■□□□□ 0.88
PRPF40AO75400 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.56■□□□□ 0.88
PRPF40AO75400 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.56■□□□□ 0.88
PRPF40AO75400 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF40AO75400 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF40AO75400 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF40AO75400 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF40AO75400 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF40AO75400 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.56■□□□□ 0.88
PRPF40AO75400 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF40AO75400 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF40AO75400 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC20.56■□□□□ 0.88
PRPF40AO75400 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.56■□□□□ 0.88
PRPF40AO75400 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF40AO75400 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
PRPF40AO75400 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF40AO75400 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC20.55■□□□□ 0.88
PRPF40AO75400 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC20.55■□□□□ 0.88
PRPF40AO75400 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF40AO75400 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF40AO75400 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF40AO75400 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC20.55■□□□□ 0.88
PRPF40AO75400 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF40AO75400 LINC00167-201ENST00000530583 1419 ntBASIC20.55■□□□□ 0.88
PRPF40AO75400 KRT8P9-201ENST00000558927 1449 ntBASIC20.55■□□□□ 0.88
PRPF40AO75400 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC20.55■□□□□ 0.88
PRPF40AO75400 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF40AO75400 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms