Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
COL6A6A6NMZ7 AC092580.3-201ENST00000430932 139 ntBASIC15.83■□□□□ 0.13
COL6A6A6NMZ7 U91328.1-201ENST00000437528 223 ntBASIC15.83■□□□□ 0.13
COL6A6A6NMZ7 S100A2-206ENST00000497140 697 ntTSL 2 BASIC15.83■□□□□ 0.13
COL6A6A6NMZ7 SERBP1P5-201ENST00000510079 1181 ntBASIC15.83■□□□□ 0.13
COL6A6A6NMZ7 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.83■□□□□ 0.13
COL6A6A6NMZ7 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.83■□□□□ 0.13
COL6A6A6NMZ7 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC15.83■□□□□ 0.13
COL6A6A6NMZ7 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC15.83■□□□□ 0.13
COL6A6A6NMZ7 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 COBL-210ENST00000632460 1941 ntTSL 5 BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 CYP51A1P2-201ENST00000419457 1499 ntBASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 AC125807.1-201ENST00000483097 614 ntBASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 KRT8P48-201ENST00000515599 1220 ntBASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 AC132938.5-201ENST00000624980 1813 ntBASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.83■□□□□ 0.12
COL6A6A6NMZ7 AC008677.1-201ENST00000519230 1561 ntBASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 GPS2P2-201ENST00000430745 888 ntBASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 AC004890.2-204ENST00000481968 304 ntBASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 TUBB3P1-201ENST00000405796 1332 ntBASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 AKAP8P1-201ENST00000434743 1349 ntBASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 RPS2P32-201ENST00000439199 892 ntBASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.82■□□□□ 0.12
COL6A6A6NMZ7 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
COL6A6A6NMZ7 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A6A6NMZ7 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC15.81■□□□□ 0.12
COL6A6A6NMZ7 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A6A6NMZ7 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
COL6A6A6NMZ7 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A6A6NMZ7 AC093484.2-201ENST00000580996 2166 ntBASIC15.81■□□□□ 0.12
COL6A6A6NMZ7 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A6A6NMZ7 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A6A6NMZ7 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC15.81■□□□□ 0.12
COL6A6A6NMZ7 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC15.81■□□□□ 0.12
COL6A6A6NMZ7 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC15.81■□□□□ 0.12
COL6A6A6NMZ7 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.81■□□□□ 0.12
COL6A6A6NMZ7 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.81■□□□□ 0.12
COL6A6A6NMZ7 AL135744.1-201ENST00000565098 629 ntBASIC15.81■□□□□ 0.12
COL6A6A6NMZ7 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A6A6NMZ7 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A6A6NMZ7 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A6A6NMZ7 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
COL6A6A6NMZ7 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
COL6A6A6NMZ7 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC15.81■□□□□ 0.12
COL6A6A6NMZ7 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A6A6NMZ7 EFS-203ENST00000429593 2610 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 AC005237.2-201ENST00000434368 219 ntBASIC15.8■□□□□ 0.12
COL6A6A6NMZ7 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms