Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
CCDC163A0A0D9SF12 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC163A0A0D9SF12 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC163A0A0D9SF12 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.4■□□□□ 0.38
CCDC163A0A0D9SF12 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC163A0A0D9SF12 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC163A0A0D9SF12 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC163A0A0D9SF12 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.4■□□□□ 0.38
CCDC163A0A0D9SF12 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
CCDC163A0A0D9SF12 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.39■□□□□ 0.38
CCDC163A0A0D9SF12 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
CCDC163A0A0D9SF12 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 PI4KAP1-204ENST00000612579 1703 ntBASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 FAM185BP-201ENST00000443595 716 ntBASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 FAM86GP-201ENST00000448322 971 ntBASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 LINC00628-201ENST00000628516 1289 ntBASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CCDC163A0A0D9SF12 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 AC190387.1-201ENST00000551683 408 ntBASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 AC138761.1-201ENST00000584393 385 ntBASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CCDC163A0A0D9SF12 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 AC109322.1-201ENST00000524499 1264 ntBASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 AC005498.2-205ENST00000593218 784 ntBASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 AJ011932.1-201ENST00000621707 465 ntBASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 AFG3L1P-217ENST00000557444 2447 ntBASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CCDC163A0A0D9SF12 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC163A0A0D9SF12 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC163A0A0D9SF12 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC163A0A0D9SF12 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
CCDC163A0A0D9SF12 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.36■□□□□ 0.37
CCDC163A0A0D9SF12 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC163A0A0D9SF12 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC163A0A0D9SF12 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CCDC163A0A0D9SF12 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms