Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
SCAPERQ9BY12 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC26.34■■□□□ 1.81
SCAPERQ9BY12 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SCAPERQ9BY12 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SCAPERQ9BY12 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SCAPERQ9BY12 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
SCAPERQ9BY12 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
SCAPERQ9BY12 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
SCAPERQ9BY12 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC26.34■■□□□ 1.81
SCAPERQ9BY12 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC26.34■■□□□ 1.81
SCAPERQ9BY12 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC26.34■■□□□ 1.81
SCAPERQ9BY12 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SCAPERQ9BY12 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
SCAPERQ9BY12 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
SCAPERQ9BY12 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
SCAPERQ9BY12 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC26.34■■□□□ 1.81
SCAPERQ9BY12 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
SCAPERQ9BY12 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC26.34■■□□□ 1.81
SCAPERQ9BY12 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SCAPERQ9BY12 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC26.33■■□□□ 1.81
SCAPERQ9BY12 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
SCAPERQ9BY12 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC26.33■■□□□ 1.81
SCAPERQ9BY12 BASP1P1-201ENST00000430708 665 ntBASIC26.33■■□□□ 1.81
SCAPERQ9BY12 AC005237.2-201ENST00000434368 219 ntBASIC26.33■■□□□ 1.81
SCAPERQ9BY12 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC26.33■■□□□ 1.81
SCAPERQ9BY12 TSPY16P-201ENST00000449843 468 ntBASIC26.33■■□□□ 1.81
SCAPERQ9BY12 SPDYE11-202ENST00000450699 704 ntBASIC26.33■■□□□ 1.81
SCAPERQ9BY12 SLC25A6P2-201ENST00000497974 877 ntBASIC26.33■■□□□ 1.81
SCAPERQ9BY12 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC26.33■■□□□ 1.81
SCAPERQ9BY12 SPDYE9P-201ENST00000570642 692 ntBASIC26.33■■□□□ 1.81
SCAPERQ9BY12 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
SCAPERQ9BY12 SPDYE10P-202ENST00000612005 668 ntBASIC26.33■■□□□ 1.81
SCAPERQ9BY12 SPDYE8P-202ENST00000612377 668 ntBASIC26.33■■□□□ 1.81
SCAPERQ9BY12 AP001059.3-201ENST00000619053 235 ntBASIC26.33■■□□□ 1.81
SCAPERQ9BY12 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC26.33■■□□□ 1.81
SCAPERQ9BY12 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC26.33■■□□□ 1.81
SCAPERQ9BY12 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
SCAPERQ9BY12 AL031598.1-201ENST00000561511 1773 ntBASIC26.33■■□□□ 1.81
SCAPERQ9BY12 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
SCAPERQ9BY12 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.81
SCAPERQ9BY12 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
SCAPERQ9BY12 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SCAPERQ9BY12 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
SCAPERQ9BY12 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC26.33■■□□□ 1.8
SCAPERQ9BY12 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SCAPERQ9BY12 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
SCAPERQ9BY12 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC26.32■■□□□ 1.8
SCAPERQ9BY12 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SCAPERQ9BY12 CENPM-205ENST00000404067 905 ntTSL 3 BASIC26.32■■□□□ 1.8
SCAPERQ9BY12 KRT18P32-201ENST00000424695 1287 ntBASIC26.32■■□□□ 1.8
SCAPERQ9BY12 AC140658.5-201ENST00000438532 169 ntBASIC26.32■■□□□ 1.8
SCAPERQ9BY12 GAPDHP21-201ENST00000450301 1010 ntBASIC26.32■■□□□ 1.8
SCAPERQ9BY12 AC079140.1-201ENST00000508039 487 ntBASIC26.32■■□□□ 1.8
SCAPERQ9BY12 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC26.32■■□□□ 1.8
SCAPERQ9BY12 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SCAPERQ9BY12 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
SCAPERQ9BY12 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC26.32■■□□□ 1.8
SCAPERQ9BY12 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SCAPERQ9BY12 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC26.32■■□□□ 1.8
SCAPERQ9BY12 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC26.32■■□□□ 1.8
SCAPERQ9BY12 GK-202ENST00000378941 458 ntTSL 3 BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 TFAMP1-201ENST00000412727 736 ntBASIC26.31■■□□□ 1.8
SCAPERQ9BY12 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 MIR943-201ENST00000401286 94 ntBASIC26.31■■□□□ 1.8
SCAPERQ9BY12 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 AL671277.1-201ENST00000429656 993 ntBASIC26.31■■□□□ 1.8
SCAPERQ9BY12 KLF2P3-201ENST00000451977 1087 ntBASIC26.31■■□□□ 1.8
SCAPERQ9BY12 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 HFE2-206ENST00000634927 506 ntTSL 4 BASIC26.31■■□□□ 1.8
SCAPERQ9BY12 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC26.3■■□□□ 1.8
SCAPERQ9BY12 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SCAPERQ9BY12 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
SCAPERQ9BY12 TUBB3P1-201ENST00000405796 1332 ntBASIC26.3■■□□□ 1.8
SCAPERQ9BY12 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC26.3■■□□□ 1.8
SCAPERQ9BY12 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SCAPERQ9BY12 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SCAPERQ9BY12 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC26.3■■□□□ 1.8
SCAPERQ9BY12 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SCAPERQ9BY12 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC26.3■■□□□ 1.8
SCAPERQ9BY12 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC26.3■■□□□ 1.8
SCAPERQ9BY12 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms