Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 AL020989.1-201ENST00000422979 469 ntBASIC17.35■□□□□ 0.37
VPS13AQ96RL7 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
VPS13AQ96RL7 AC004945.1-201ENST00000416738 983 ntBASIC17.34■□□□□ 0.37
VPS13AQ96RL7 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC17.34■□□□□ 0.37
VPS13AQ96RL7 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
VPS13AQ96RL7 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.34■□□□□ 0.37
VPS13AQ96RL7 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS13AQ96RL7 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
VPS13AQ96RL7 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.34■□□□□ 0.37
VPS13AQ96RL7 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS13AQ96RL7 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.34■□□□□ 0.37
VPS13AQ96RL7 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.34■□□□□ 0.37
VPS13AQ96RL7 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC17.34■□□□□ 0.37
VPS13AQ96RL7 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.34■□□□□ 0.37
VPS13AQ96RL7 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS13AQ96RL7 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.34■□□□□ 0.37
VPS13AQ96RL7 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
VPS13AQ96RL7 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
VPS13AQ96RL7 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS13AQ96RL7 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
VPS13AQ96RL7 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC17.34■□□□□ 0.37
VPS13AQ96RL7 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.34■□□□□ 0.37
VPS13AQ96RL7 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
VPS13AQ96RL7 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
VPS13AQ96RL7 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.37
VPS13AQ96RL7 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
VPS13AQ96RL7 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
VPS13AQ96RL7 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
VPS13AQ96RL7 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
VPS13AQ96RL7 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
VPS13AQ96RL7 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.33■□□□□ 0.37
VPS13AQ96RL7 AC092580.3-201ENST00000430932 139 ntBASIC17.33■□□□□ 0.37
VPS13AQ96RL7 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.33■□□□□ 0.37
VPS13AQ96RL7 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.33■□□□□ 0.37
VPS13AQ96RL7 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS13AQ96RL7 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS13AQ96RL7 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS13AQ96RL7 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
VPS13AQ96RL7 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VPS13AQ96RL7 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
VPS13AQ96RL7 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.33■□□□□ 0.36
VPS13AQ96RL7 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC17.33■□□□□ 0.36
VPS13AQ96RL7 IGHV3-71-201ENST00000523324 359 ntBASIC17.33■□□□□ 0.36
VPS13AQ96RL7 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS13AQ96RL7 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VPS13AQ96RL7 AC084346.2-201ENST00000607097 949 ntBASIC17.33■□□□□ 0.36
VPS13AQ96RL7 AC097637.2-201ENST00000624096 1997 ntBASIC17.33■□□□□ 0.36
VPS13AQ96RL7 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS13AQ96RL7 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.33■□□□□ 0.36
VPS13AQ96RL7 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VPS13AQ96RL7 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.33■□□□□ 0.36
VPS13AQ96RL7 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS13AQ96RL7 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
VPS13AQ96RL7 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS13AQ96RL7 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS13AQ96RL7 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC17.33■□□□□ 0.36
VPS13AQ96RL7 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 CALY-202ENST00000368555 783 ntTSL 2 BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 SPDYE11-202ENST00000450699 704 ntBASIC17.32■□□□□ 0.36
VPS13AQ96RL7 GPR53P-205ENST00000457298 1084 ntBASIC17.32■□□□□ 0.36
VPS13AQ96RL7 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 AC004890.2-204ENST00000481968 304 ntBASIC17.32■□□□□ 0.36
VPS13AQ96RL7 SPDYE9P-201ENST00000570642 692 ntBASIC17.32■□□□□ 0.36
VPS13AQ96RL7 SPDYE10P-202ENST00000612005 668 ntBASIC17.32■□□□□ 0.36
VPS13AQ96RL7 SPDYE8P-202ENST00000612377 668 ntBASIC17.32■□□□□ 0.36
VPS13AQ96RL7 AC006116.8-202ENST00000587620 1550 ntBASIC17.32■□□□□ 0.36
VPS13AQ96RL7 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 AC140878.1-201ENST00000565277 250 ntBASIC17.32■□□□□ 0.36
VPS13AQ96RL7 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.32■□□□□ 0.36
VPS13AQ96RL7 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms