Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP4CQ96CF2 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 MINOS1P3-201ENST00000457048 203 ntBASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 ABR-204ENST00000543210 1049 ntTSL 2 BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 ABR-217ENST00000572441 563 ntTSL 4 BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP4CQ96CF2 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 AC132938.6-201ENST00000623828 1655 ntBASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 Z69720.1-201ENST00000601483 472 ntBASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP4CQ96CF2 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 PCDHB18P-201ENST00000524813 2368 ntBASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 IGHV3-47-201ENST00000425060 335 ntBASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 KRT18P65-201ENST00000439811 1286 ntBASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 AC068472.1-201ENST00000474589 881 ntBASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 AC091304.2-201ENST00000564639 760 ntBASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 TBCB-205ENST00000585746 875 ntTSL 3 BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 GXYLT1P4-201ENST00000613576 1192 ntBASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CHMP4CQ96CF2 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms