Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
ERCC4Q92889 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
ERCC4Q92889 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ERCC4Q92889 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
ERCC4Q92889 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC20.09■□□□□ 0.81
ERCC4Q92889 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
ERCC4Q92889 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
ERCC4Q92889 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
ERCC4Q92889 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ERCC4Q92889 KRT8P47-201ENST00000604727 1398 ntBASIC20.08■□□□□ 0.81
ERCC4Q92889 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC20.08■□□□□ 0.81
ERCC4Q92889 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ERCC4Q92889 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ERCC4Q92889 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
ERCC4Q92889 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ERCC4Q92889 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC20.08■□□□□ 0.81
ERCC4Q92889 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC20.08■□□□□ 0.81
ERCC4Q92889 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ERCC4Q92889 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.81
ERCC4Q92889 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ERCC4Q92889 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
ERCC4Q92889 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.08■□□□□ 0.81
ERCC4Q92889 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.08■□□□□ 0.81
ERCC4Q92889 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.08■□□□□ 0.81
ERCC4Q92889 NEK4P2-201ENST00000580004 1012 ntBASIC20.08■□□□□ 0.81
ERCC4Q92889 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
ERCC4Q92889 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
ERCC4Q92889 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
ERCC4Q92889 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
ERCC4Q92889 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC20.08■□□□□ 0.8
ERCC4Q92889 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
ERCC4Q92889 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC20.08■□□□□ 0.8
ERCC4Q92889 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
ERCC4Q92889 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
ERCC4Q92889 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
ERCC4Q92889 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.08■□□□□ 0.8
ERCC4Q92889 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC4Q92889 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC4Q92889 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC4Q92889 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC4Q92889 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC20.07■□□□□ 0.8
ERCC4Q92889 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC4Q92889 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.07■□□□□ 0.8
ERCC4Q92889 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
ERCC4Q92889 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC4Q92889 TPR-209ENST00000613151 2478 ntTSL 5 BASIC20.07■□□□□ 0.8
ERCC4Q92889 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC4Q92889 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC4Q92889 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.07■□□□□ 0.8
ERCC4Q92889 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.07■□□□□ 0.8
ERCC4Q92889 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
ERCC4Q92889 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC4Q92889 UBALD1-205ENST00000590891 2641 ntBASIC20.07■□□□□ 0.8
ERCC4Q92889 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC4Q92889 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC20.07■□□□□ 0.8
ERCC4Q92889 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC4Q92889 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC4Q92889 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC20.07■□□□□ 0.8
ERCC4Q92889 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC20.07■□□□□ 0.8
ERCC4Q92889 AL138688.1-201ENST00000624851 1594 ntBASIC20.07■□□□□ 0.8
ERCC4Q92889 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC20.07■□□□□ 0.8
ERCC4Q92889 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.07■□□□□ 0.8
ERCC4Q92889 AC124067.4-201ENST00000519691 2379 ntBASIC20.07■□□□□ 0.8
ERCC4Q92889 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC4Q92889 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC4Q92889 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC20.07■□□□□ 0.8
ERCC4Q92889 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
ERCC4Q92889 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
ERCC4Q92889 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC20.07■□□□□ 0.8
ERCC4Q92889 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
ERCC4Q92889 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC4Q92889 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC4Q92889 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC20.06■□□□□ 0.8
ERCC4Q92889 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC4Q92889 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC4Q92889 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
ERCC4Q92889 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
ERCC4Q92889 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC4Q92889 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC4Q92889 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.06■□□□□ 0.8
ERCC4Q92889 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC4Q92889 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC4Q92889 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.06■□□□□ 0.8
ERCC4Q92889 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC4Q92889 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
ERCC4Q92889 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC4Q92889 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC4Q92889 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.06■□□□□ 0.8
ERCC4Q92889 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC4Q92889 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.06■□□□□ 0.8
ERCC4Q92889 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.06■□□□□ 0.8
ERCC4Q92889 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
ERCC4Q92889 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
ERCC4Q92889 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.06■□□□□ 0.8
ERCC4Q92889 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.06■□□□□ 0.8
ERCC4Q92889 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC4Q92889 AC141257.4-201ENST00000634557 245 ntBASIC20.06■□□□□ 0.8
ERCC4Q92889 AC136944.6-201ENST00000634818 245 ntBASIC20.06■□□□□ 0.8
ERCC4Q92889 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC4Q92889 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms