Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC27.53■■■□□ 2
VPS8Q8N3P4 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
VPS8Q8N3P4 TEX30-205ENST00000376029 959 ntTSL 2 BASIC27.52■■■□□ 2
VPS8Q8N3P4 ARTN-206ENST00000472435 402 ntTSL 3 BASIC27.52■■■□□ 2
VPS8Q8N3P4 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
VPS8Q8N3P4 RPL18-209ENST00000550645 463 ntTSL 5 BASIC27.52■■■□□ 2
VPS8Q8N3P4 RPL18-214ENST00000552588 559 ntTSL 3 BASIC27.52■■■□□ 2
VPS8Q8N3P4 NME4-212ENST00000621774 904 ntTSL 3 BASIC27.52■■■□□ 2
VPS8Q8N3P4 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
VPS8Q8N3P4 CD276-203ENST00000537340 2439 ntTSL 2 BASIC27.52■■■□□ 2
VPS8Q8N3P4 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC27.52■■■□□ 2
VPS8Q8N3P4 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC27.52■■■□□ 2
VPS8Q8N3P4 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC27.52■■■□□ 2
VPS8Q8N3P4 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC27.52■■■□□ 2
VPS8Q8N3P4 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC27.52■■■□□ 2
VPS8Q8N3P4 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC27.52■■■□□ 2
VPS8Q8N3P4 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC27.52■■■□□ 2
VPS8Q8N3P4 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■■□□ 2
VPS8Q8N3P4 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC27.51■■□□□ 1.99
VPS8Q8N3P4 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC27.51■■□□□ 1.99
VPS8Q8N3P4 AL590627.1-203ENST00000421194 1026 ntBASIC27.51■■□□□ 1.99
VPS8Q8N3P4 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC27.51■■□□□ 1.99
VPS8Q8N3P4 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC27.51■■□□□ 1.99
VPS8Q8N3P4 AL353135.1-201ENST00000606729 504 ntBASIC27.51■■□□□ 1.99
VPS8Q8N3P4 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC27.51■■□□□ 1.99
VPS8Q8N3P4 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC27.51■■□□□ 1.99
VPS8Q8N3P4 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC27.51■■□□□ 1.99
VPS8Q8N3P4 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC27.51■■□□□ 1.99
VPS8Q8N3P4 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
VPS8Q8N3P4 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC27.51■■□□□ 1.99
VPS8Q8N3P4 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC27.51■■□□□ 1.99
VPS8Q8N3P4 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
VPS8Q8N3P4 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 CD63-204ENST00000546939 779 ntTSL 3 BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 SLC25A1P3-201ENST00000395415 828 ntBASIC27.5■■□□□ 1.99
VPS8Q8N3P4 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 AC105339.3-201ENST00000560043 636 ntBASIC27.5■■□□□ 1.99
VPS8Q8N3P4 AL356488.2-201ENST00000602755 427 ntBASIC27.5■■□□□ 1.99
VPS8Q8N3P4 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
VPS8Q8N3P4 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC27.49■■□□□ 1.99
VPS8Q8N3P4 AL135999.2-201ENST00000622438 1686 ntBASIC27.49■■□□□ 1.99
VPS8Q8N3P4 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
VPS8Q8N3P4 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC27.49■■□□□ 1.99
VPS8Q8N3P4 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
VPS8Q8N3P4 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC27.49■■□□□ 1.99
VPS8Q8N3P4 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
VPS8Q8N3P4 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
VPS8Q8N3P4 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC27.49■■□□□ 1.99
VPS8Q8N3P4 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC27.49■■□□□ 1.99
VPS8Q8N3P4 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC27.49■■□□□ 1.99
VPS8Q8N3P4 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
VPS8Q8N3P4 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
VPS8Q8N3P4 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC27.49■■□□□ 1.99
VPS8Q8N3P4 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
VPS8Q8N3P4 CIPC-205ENST00000555437 566 ntTSL 3 BASIC27.49■■□□□ 1.99
VPS8Q8N3P4 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC27.49■■□□□ 1.99
VPS8Q8N3P4 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC27.49■■□□□ 1.99
VPS8Q8N3P4 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
VPS8Q8N3P4 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC27.49■■□□□ 1.99
VPS8Q8N3P4 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC27.49■■□□□ 1.99
VPS8Q8N3P4 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
VPS8Q8N3P4 AC068880.1-201ENST00000507289 2297 ntBASIC27.48■■□□□ 1.99
VPS8Q8N3P4 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC27.48■■□□□ 1.99
VPS8Q8N3P4 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC27.48■■□□□ 1.99
VPS8Q8N3P4 GNAS-203ENST00000306120 1878 ntBASIC27.48■■□□□ 1.99
VPS8Q8N3P4 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC27.48■■□□□ 1.99
VPS8Q8N3P4 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC27.48■■□□□ 1.99
VPS8Q8N3P4 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC27.48■■□□□ 1.99
VPS8Q8N3P4 AC006504.4-201ENST00000592118 1568 ntBASIC27.48■■□□□ 1.99
VPS8Q8N3P4 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC27.48■■□□□ 1.99
VPS8Q8N3P4 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
VPS8Q8N3P4 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC27.48■■□□□ 1.99
VPS8Q8N3P4 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
VPS8Q8N3P4 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
VPS8Q8N3P4 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
VPS8Q8N3P4 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC27.48■■□□□ 1.99
VPS8Q8N3P4 AC092910.1-201ENST00000482027 1129 ntBASIC27.48■■□□□ 1.99
VPS8Q8N3P4 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC27.48■■□□□ 1.99
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms