Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC23.83■■□□□ 1.4
NPHP3Q7Z494 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.4
NPHP3Q7Z494 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
NPHP3Q7Z494 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC23.83■■□□□ 1.4
NPHP3Q7Z494 ACTG1P4-201ENST00000425123 1122 ntBASIC23.83■■□□□ 1.4
NPHP3Q7Z494 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC23.83■■□□□ 1.4
NPHP3Q7Z494 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
NPHP3Q7Z494 KRT8P48-201ENST00000515599 1220 ntBASIC23.83■■□□□ 1.4
NPHP3Q7Z494 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC23.83■■□□□ 1.4
NPHP3Q7Z494 FAM86C2P-203ENST00000528684 1004 ntBASIC23.83■■□□□ 1.4
NPHP3Q7Z494 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC23.83■■□□□ 1.4
NPHP3Q7Z494 AL590787.1-201ENST00000568856 1315 ntBASIC23.82■■□□□ 1.4
NPHP3Q7Z494 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 BX276092.7-203ENST00000637198 1536 ntBASIC23.82■■□□□ 1.4
NPHP3Q7Z494 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 GSAP-205ENST00000430584 600 ntTSL 5 BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 GAPDHP21-201ENST00000450301 1010 ntBASIC23.82■■□□□ 1.4
NPHP3Q7Z494 RPL28-209ENST00000560055 670 ntTSL 3 BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
NPHP3Q7Z494 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC23.81■■□□□ 1.4
NPHP3Q7Z494 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NPHP3Q7Z494 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
NPHP3Q7Z494 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC23.81■■□□□ 1.4
NPHP3Q7Z494 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NPHP3Q7Z494 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
NPHP3Q7Z494 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC23.81■■□□□ 1.4
NPHP3Q7Z494 AC005237.2-201ENST00000434368 219 ntBASIC23.81■■□□□ 1.4
NPHP3Q7Z494 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC23.81■■□□□ 1.4
NPHP3Q7Z494 AC069335.1-201ENST00000489972 472 ntBASIC23.81■■□□□ 1.4
NPHP3Q7Z494 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
NPHP3Q7Z494 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC23.81■■□□□ 1.4
NPHP3Q7Z494 BSG-214ENST00000614867 960 ntTSL 3 BASIC23.81■■□□□ 1.4
NPHP3Q7Z494 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
NPHP3Q7Z494 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC23.81■■□□□ 1.4
NPHP3Q7Z494 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP3Q7Z494 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC23.8■■□□□ 1.4
NPHP3Q7Z494 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
NPHP3Q7Z494 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP3Q7Z494 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC23.8■■□□□ 1.4
NPHP3Q7Z494 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP3Q7Z494 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP3Q7Z494 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP3Q7Z494 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC23.8■■□□□ 1.4
NPHP3Q7Z494 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
NPHP3Q7Z494 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP3Q7Z494 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP3Q7Z494 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP3Q7Z494 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP3Q7Z494 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC23.8■■□□□ 1.4
NPHP3Q7Z494 TSPY16P-201ENST00000449843 468 ntBASIC23.8■■□□□ 1.4
NPHP3Q7Z494 SPDYE11-202ENST00000450699 704 ntBASIC23.8■■□□□ 1.4
NPHP3Q7Z494 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC23.8■■□□□ 1.4
NPHP3Q7Z494 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
NPHP3Q7Z494 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC23.8■■□□□ 1.4
NPHP3Q7Z494 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC23.8■■□□□ 1.4
NPHP3Q7Z494 SPDYE9P-201ENST00000570642 692 ntBASIC23.8■■□□□ 1.4
NPHP3Q7Z494 SPDYE10P-202ENST00000612005 668 ntBASIC23.8■■□□□ 1.4
NPHP3Q7Z494 SPDYE8P-202ENST00000612377 668 ntBASIC23.8■■□□□ 1.4
NPHP3Q7Z494 AP001059.3-201ENST00000619053 235 ntBASIC23.8■■□□□ 1.4
NPHP3Q7Z494 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC23.8■■□□□ 1.4
NPHP3Q7Z494 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
NPHP3Q7Z494 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP3Q7Z494 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP3Q7Z494 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP3Q7Z494 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP3Q7Z494 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
NPHP3Q7Z494 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP3Q7Z494 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC23.79■■□□□ 1.4
NPHP3Q7Z494 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC23.79■■□□□ 1.4
NPHP3Q7Z494 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP3Q7Z494 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
NPHP3Q7Z494 VMA21-202ENST00000370361 693 ntTSL 5 BASIC23.79■■□□□ 1.4
NPHP3Q7Z494 TFAMP1-201ENST00000412727 736 ntBASIC23.79■■□□□ 1.4
NPHP3Q7Z494 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC23.79■■□□□ 1.4
NPHP3Q7Z494 AL671277.1-201ENST00000429656 993 ntBASIC23.79■■□□□ 1.4
NPHP3Q7Z494 FAM207CP-201ENST00000443486 507 ntBASIC23.79■■□□□ 1.4
NPHP3Q7Z494 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms