Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SOX4Q06945 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SOX4Q06945 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SOX4Q06945 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
SOX4Q06945 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SOX4Q06945 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SOX4Q06945 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SOX4Q06945 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC18.86■□□□□ 0.61
SOX4Q06945 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SOX4Q06945 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.86■□□□□ 0.61
SOX4Q06945 AC073621.1-201ENST00000392730 636 ntBASIC18.86■□□□□ 0.61
SOX4Q06945 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.86■□□□□ 0.61
SOX4Q06945 AC005104.2-201ENST00000427818 678 ntBASIC18.86■□□□□ 0.61
SOX4Q06945 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.86■□□□□ 0.61
SOX4Q06945 AC002558.1-201ENST00000488906 803 ntBASIC18.86■□□□□ 0.61
SOX4Q06945 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.86■□□□□ 0.61
SOX4Q06945 AC117500.6-201ENST00000624871 588 ntBASIC18.86■□□□□ 0.61
SOX4Q06945 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.86■□□□□ 0.61
SOX4Q06945 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SOX4Q06945 AC012317.2-201ENST00000623305 2251 ntBASIC18.86■□□□□ 0.61
SOX4Q06945 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SOX4Q06945 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.86■□□□□ 0.61
SOX4Q06945 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SOX4Q06945 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SOX4Q06945 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
SOX4Q06945 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SOX4Q06945 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
SOX4Q06945 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.86■□□□□ 0.61
SOX4Q06945 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
SOX4Q06945 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
SOX4Q06945 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
SOX4Q06945 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.85■□□□□ 0.61
SOX4Q06945 AC104109.2-201ENST00000602919 1418 ntBASIC18.85■□□□□ 0.61
SOX4Q06945 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SOX4Q06945 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SOX4Q06945 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.85■□□□□ 0.61
SOX4Q06945 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
SOX4Q06945 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
SOX4Q06945 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.85■□□□□ 0.61
SOX4Q06945 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.85■□□□□ 0.61
SOX4Q06945 RNA5SP415-201ENST00000517246 115 ntBASIC18.85■□□□□ 0.61
SOX4Q06945 AC145285.3-201ENST00000564603 959 ntBASIC18.85■□□□□ 0.61
SOX4Q06945 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC18.85■□□□□ 0.61
SOX4Q06945 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.85■□□□□ 0.61
SOX4Q06945 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SOX4Q06945 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SOX4Q06945 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.85■□□□□ 0.61
SOX4Q06945 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SOX4Q06945 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.85■□□□□ 0.61
SOX4Q06945 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SOX4Q06945 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.85■□□□□ 0.61
SOX4Q06945 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SOX4Q06945 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.85■□□□□ 0.61
SOX4Q06945 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SOX4Q06945 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
SOX4Q06945 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC18.84■□□□□ 0.61
SOX4Q06945 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SOX4Q06945 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SOX4Q06945 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SOX4Q06945 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SOX4Q06945 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.84■□□□□ 0.61
SOX4Q06945 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.84■□□□□ 0.61
SOX4Q06945 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.84■□□□□ 0.61
SOX4Q06945 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.84■□□□□ 0.61
SOX4Q06945 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SOX4Q06945 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
SOX4Q06945 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
SOX4Q06945 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.84■□□□□ 0.61
SOX4Q06945 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.84■□□□□ 0.61
SOX4Q06945 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.84■□□□□ 0.61
SOX4Q06945 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SOX4Q06945 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.84■□□□□ 0.61
SOX4Q06945 STK19B-204ENST00000512515 211 ntBASIC18.84■□□□□ 0.61
SOX4Q06945 IGHV3-52-201ENST00000519770 353 ntBASIC18.84■□□□□ 0.61
SOX4Q06945 AC034105.1-201ENST00000563488 319 ntBASIC18.84■□□□□ 0.61
SOX4Q06945 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.84■□□□□ 0.61
SOX4Q06945 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SOX4Q06945 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.84■□□□□ 0.61
SOX4Q06945 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
SOX4Q06945 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
SOX4Q06945 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.84■□□□□ 0.61
SOX4Q06945 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.84■□□□□ 0.61
SOX4Q06945 AC009336.1-201ENST00000608941 1553 ntBASIC18.84■□□□□ 0.61
SOX4Q06945 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SOX4Q06945 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
SOX4Q06945 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
SOX4Q06945 AL390961.4-201ENST00000623958 2535 ntBASIC18.83■□□□□ 0.61
SOX4Q06945 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SOX4Q06945 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SOX4Q06945 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
SOX4Q06945 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SOX4Q06945 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SOX4Q06945 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SOX4Q06945 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SOX4Q06945 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.83■□□□□ 0.6
SOX4Q06945 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SOX4Q06945 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SOX4Q06945 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.83■□□□□ 0.6
SOX4Q06945 PIN1-206ENST00000587625 878 ntTSL 2 BASIC18.83■□□□□ 0.6
SOX4Q06945 AL356488.2-201ENST00000602755 427 ntBASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms