Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
PRKDCP78527 STK25P1-201ENST00000585406 838 ntBASIC12.64□□□□□ -0.39
PRKDCP78527 AC004790.1-201ENST00000612686 536 ntBASIC12.64□□□□□ -0.39
PRKDCP78527 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
PRKDCP78527 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
PRKDCP78527 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
PRKDCP78527 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
PRKDCP78527 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC12.64□□□□□ -0.39
PRKDCP78527 PI4KAP1-204ENST00000612579 1703 ntBASIC12.64□□□□□ -0.39
PRKDCP78527 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
PRKDCP78527 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
PRKDCP78527 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
PRKDCP78527 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC12.64□□□□□ -0.39
PRKDCP78527 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC12.64□□□□□ -0.39
PRKDCP78527 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC12.64□□□□□ -0.39
PRKDCP78527 SLC25A6P2-201ENST00000497974 877 ntBASIC12.64□□□□□ -0.39
PRKDCP78527 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC12.64□□□□□ -0.39
PRKDCP78527 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC12.64□□□□□ -0.39
PRKDCP78527 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
PRKDCP78527 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
PRKDCP78527 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
PRKDCP78527 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
PRKDCP78527 HARS-203ENST00000431330 1774 ntTSL 2 BASIC12.63□□□□□ -0.39
PRKDCP78527 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
PRKDCP78527 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
PRKDCP78527 ARL16-210ENST00000574938 751 ntTSL 2 BASIC12.63□□□□□ -0.39
PRKDCP78527 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC12.63□□□□□ -0.39
PRKDCP78527 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
PRKDCP78527 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC12.63□□□□□ -0.39
PRKDCP78527 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC12.63□□□□□ -0.39
PRKDCP78527 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
PRKDCP78527 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC12.63□□□□□ -0.39
PRKDCP78527 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
PRKDCP78527 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC12.63□□□□□ -0.39
PRKDCP78527 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC12.63□□□□□ -0.39
PRKDCP78527 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PRKDCP78527 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
PRKDCP78527 REEP4-207ENST00000523293 913 ntTSL 3 BASIC12.63□□□□□ -0.39
PRKDCP78527 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC12.63□□□□□ -0.39
PRKDCP78527 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC12.63□□□□□ -0.39
PRKDCP78527 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
PRKDCP78527 RARRES2P8-201ENST00000566335 367 ntBASIC12.63□□□□□ -0.39
PRKDCP78527 UXT-AS1-201ENST00000590504 1525 ntBASIC12.63□□□□□ -0.39
PRKDCP78527 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
PRKDCP78527 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
PRKDCP78527 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
PRKDCP78527 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC12.63□□□□□ -0.39
PRKDCP78527 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC12.63□□□□□ -0.39
PRKDCP78527 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC12.63□□□□□ -0.39
PRKDCP78527 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
PRKDCP78527 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
PRKDCP78527 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC12.63□□□□□ -0.39
PRKDCP78527 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
PRKDCP78527 CD74-212ENST00000524315 584 ntTSL 5 BASIC12.63□□□□□ -0.39
PRKDCP78527 FUZ-207ENST00000526575 482 ntTSL 4 BASIC12.63□□□□□ -0.39
PRKDCP78527 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC12.63□□□□□ -0.39
PRKDCP78527 GGTLC5P-201ENST00000617623 998 ntBASIC12.63□□□□□ -0.39
PRKDCP78527 AC129492.6-201ENST00000611383 1305 ntBASIC12.63□□□□□ -0.39
PRKDCP78527 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC12.63□□□□□ -0.39
PRKDCP78527 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
PRKDCP78527 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC12.62□□□□□ -0.39
PRKDCP78527 MYLKP1-201ENST00000509077 1580 ntBASIC12.62□□□□□ -0.39
PRKDCP78527 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
PRKDCP78527 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PRKDCP78527 AL671277.1-201ENST00000429656 993 ntBASIC12.62□□□□□ -0.39
PRKDCP78527 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC12.62□□□□□ -0.39
PRKDCP78527 AC140658.5-201ENST00000438532 169 ntBASIC12.62□□□□□ -0.39
PRKDCP78527 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC12.62□□□□□ -0.39
PRKDCP78527 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC12.62□□□□□ -0.39
PRKDCP78527 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC12.62□□□□□ -0.39
PRKDCP78527 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC12.62□□□□□ -0.39
PRKDCP78527 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PRKDCP78527 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
PRKDCP78527 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
PRKDCP78527 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PRKDCP78527 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
PRKDCP78527 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
PRKDCP78527 AP006294.1-201ENST00000415407 339 ntBASIC12.62□□□□□ -0.39
PRKDCP78527 ZNF767P-206ENST00000513792 565 ntBASIC12.62□□□□□ -0.39
PRKDCP78527 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC12.62□□□□□ -0.39
PRKDCP78527 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
PRKDCP78527 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
PRKDCP78527 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
PRKDCP78527 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PRKDCP78527 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PRKDCP78527 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
PRKDCP78527 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
PRKDCP78527 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC12.62□□□□□ -0.39
PRKDCP78527 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC12.62□□□□□ -0.39
PRKDCP78527 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
PRKDCP78527 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
PRKDCP78527 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
PRKDCP78527 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
PRKDCP78527 HAUS4P1-201ENST00000406739 1145 ntBASIC12.61□□□□□ -0.39
PRKDCP78527 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
PRKDCP78527 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC12.61□□□□□ -0.39
PRKDCP78527 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
PRKDCP78527 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
PRKDCP78527 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC12.61□□□□□ -0.39
PRKDCP78527 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms