Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PEX3P56589 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PEX3P56589 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PEX3P56589 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.5■□□□□ 0.71
PEX3P56589 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
PEX3P56589 CD9-202ENST00000382515 1229 ntTSL 5 BASIC19.5■□□□□ 0.71
PEX3P56589 CTNS-203ENST00000399306 803 ntTSL 3 BASIC19.5■□□□□ 0.71
PEX3P56589 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.5■□□□□ 0.71
PEX3P56589 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC19.5■□□□□ 0.71
PEX3P56589 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC19.5■□□□□ 0.71
PEX3P56589 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.5■□□□□ 0.71
PEX3P56589 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.5■□□□□ 0.71
PEX3P56589 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC19.5■□□□□ 0.71
PEX3P56589 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC19.5■□□□□ 0.71
PEX3P56589 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC19.5■□□□□ 0.71
PEX3P56589 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
PEX3P56589 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.5■□□□□ 0.71
PEX3P56589 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.5■□□□□ 0.71
PEX3P56589 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PEX3P56589 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.5■□□□□ 0.71
PEX3P56589 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PEX3P56589 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
PEX3P56589 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PEX3P56589 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
PEX3P56589 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
PEX3P56589 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
PEX3P56589 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC19.49■□□□□ 0.71
PEX3P56589 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
PEX3P56589 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
PEX3P56589 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.49■□□□□ 0.71
PEX3P56589 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PEX3P56589 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
PEX3P56589 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
PEX3P56589 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PEX3P56589 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PEX3P56589 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PEX3P56589 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
PEX3P56589 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.49■□□□□ 0.71
PEX3P56589 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC19.49■□□□□ 0.71
PEX3P56589 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC19.49■□□□□ 0.71
PEX3P56589 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.49■□□□□ 0.71
PEX3P56589 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC19.49■□□□□ 0.71
PEX3P56589 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC19.49■□□□□ 0.71
PEX3P56589 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC19.49■□□□□ 0.71
PEX3P56589 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
PEX3P56589 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PEX3P56589 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PEX3P56589 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
PEX3P56589 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC19.49■□□□□ 0.71
PEX3P56589 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PEX3P56589 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PEX3P56589 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
PEX3P56589 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
PEX3P56589 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC19.49■□□□□ 0.71
PEX3P56589 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
PEX3P56589 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC19.49■□□□□ 0.71
PEX3P56589 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
PEX3P56589 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PEX3P56589 AC067852.2-201ENST00000590513 2313 ntBASIC19.48■□□□□ 0.71
PEX3P56589 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC19.48■□□□□ 0.71
PEX3P56589 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC19.48■□□□□ 0.71
PEX3P56589 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
PEX3P56589 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
PEX3P56589 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
PEX3P56589 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PEX3P56589 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PEX3P56589 AKR1C7P-201ENST00000305623 895 ntBASIC19.48■□□□□ 0.71
PEX3P56589 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
PEX3P56589 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PEX3P56589 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
PEX3P56589 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PEX3P56589 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PEX3P56589 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC19.48■□□□□ 0.71
PEX3P56589 EMBP1-201ENST00000458200 901 ntBASIC19.48■□□□□ 0.71
PEX3P56589 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.48■□□□□ 0.71
PEX3P56589 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC19.48■□□□□ 0.71
PEX3P56589 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.48■□□□□ 0.71
PEX3P56589 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.48■□□□□ 0.71
PEX3P56589 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PEX3P56589 RN7SL510P-201ENST00000581311 263 ntBASIC19.48■□□□□ 0.71
PEX3P56589 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PEX3P56589 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PEX3P56589 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PEX3P56589 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.48■□□□□ 0.71
PEX3P56589 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
PEX3P56589 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PEX3P56589 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
PEX3P56589 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC19.48■□□□□ 0.71
PEX3P56589 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
PEX3P56589 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
PEX3P56589 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC19.47■□□□□ 0.71
PEX3P56589 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
PEX3P56589 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PEX3P56589 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC19.47■□□□□ 0.71
PEX3P56589 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PEX3P56589 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.47■□□□□ 0.71
PEX3P56589 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.47■□□□□ 0.71
PEX3P56589 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PEX3P56589 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PEX3P56589 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 8.7 ms