Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RPL30-202ENST00000396070 440 ntTSL 2 BASIC24.32■■□□□ 1.48
MSH6P52701 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC24.32■■□□□ 1.48
MSH6P52701 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
MSH6P52701 NOP2-220ENST00000545915 630 ntTSL 2 BASIC24.32■■□□□ 1.48
MSH6P52701 ACTL9-202ENST00000612068 1252 ntBASIC24.32■■□□□ 1.48
MSH6P52701 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC24.32■■□□□ 1.48
MSH6P52701 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
MSH6P52701 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC24.32■■□□□ 1.48
MSH6P52701 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
MSH6P52701 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC24.32■■□□□ 1.48
MSH6P52701 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH6P52701 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC24.32■■□□□ 1.48
MSH6P52701 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH6P52701 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC24.32■■□□□ 1.48
MSH6P52701 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC24.32■■□□□ 1.48
MSH6P52701 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH6P52701 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH6P52701 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
MSH6P52701 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
MSH6P52701 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC24.31■■□□□ 1.48
MSH6P52701 AL592309.1-201ENST00000443127 649 ntBASIC24.31■■□□□ 1.48
MSH6P52701 RN7SL589P-201ENST00000481268 310 ntBASIC24.31■■□□□ 1.48
MSH6P52701 BAD-207ENST00000544785 525 ntTSL 3 BASIC24.31■■□□□ 1.48
MSH6P52701 AC140878.1-201ENST00000565277 250 ntBASIC24.31■■□□□ 1.48
MSH6P52701 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
MSH6P52701 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
MSH6P52701 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC24.31■■□□□ 1.48
MSH6P52701 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
MSH6P52701 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC24.31■■□□□ 1.48
MSH6P52701 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC24.3■■□□□ 1.48
MSH6P52701 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
MSH6P52701 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
MSH6P52701 GOLGA6L11P-201ENST00000417252 1298 ntBASIC24.3■■□□□ 1.48
MSH6P52701 GPS2P2-201ENST00000430745 888 ntBASIC24.3■■□□□ 1.48
MSH6P52701 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC24.3■■□□□ 1.48
MSH6P52701 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC24.3■■□□□ 1.48
MSH6P52701 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
MSH6P52701 COQ6-210ENST00000554920 649 ntTSL 3 BASIC24.3■■□□□ 1.48
MSH6P52701 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
MSH6P52701 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC24.3■■□□□ 1.48
MSH6P52701 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC24.3■■□□□ 1.48
MSH6P52701 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
MSH6P52701 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
MSH6P52701 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
MSH6P52701 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
MSH6P52701 AC005332.7-201ENST00000614046 2005 ntBASIC24.3■■□□□ 1.48
MSH6P52701 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
MSH6P52701 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC24.3■■□□□ 1.48
MSH6P52701 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
MSH6P52701 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
MSH6P52701 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
MSH6P52701 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC24.3■■□□□ 1.48
MSH6P52701 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
MSH6P52701 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC24.3■■□□□ 1.48
MSH6P52701 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
MSH6P52701 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
MSH6P52701 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC24.3■■□□□ 1.48
MSH6P52701 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
MSH6P52701 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
MSH6P52701 TREML5P-201ENST00000421694 576 ntBASIC24.29■■□□□ 1.48
MSH6P52701 FAM58DP-201ENST00000428076 619 ntBASIC24.29■■□□□ 1.48
MSH6P52701 AL671277.1-201ENST00000429656 993 ntBASIC24.29■■□□□ 1.48
MSH6P52701 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC24.29■■□□□ 1.48
MSH6P52701 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC24.29■■□□□ 1.48
MSH6P52701 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC24.29■■□□□ 1.48
MSH6P52701 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC24.29■■□□□ 1.48
MSH6P52701 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
MSH6P52701 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC24.29■■□□□ 1.48
MSH6P52701 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC24.29■■□□□ 1.48
MSH6P52701 AC109462.3-201ENST00000573934 613 ntBASIC24.29■■□□□ 1.48
MSH6P52701 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
MSH6P52701 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
MSH6P52701 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
MSH6P52701 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
MSH6P52701 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC24.29■■□□□ 1.48
MSH6P52701 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
MSH6P52701 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC24.29■■□□□ 1.48
MSH6P52701 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
MSH6P52701 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
MSH6P52701 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC24.29■■□□□ 1.48
MSH6P52701 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
MSH6P52701 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
MSH6P52701 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC24.29■■□□□ 1.48
MSH6P52701 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC24.29■■□□□ 1.48
MSH6P52701 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC24.29■■□□□ 1.48
MSH6P52701 AC079140.1-201ENST00000508039 487 ntBASIC24.29■■□□□ 1.48
MSH6P52701 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
MSH6P52701 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC24.29■■□□□ 1.48
MSH6P52701 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
MSH6P52701 AC009336.1-201ENST00000608941 1553 ntBASIC24.28■■□□□ 1.48
MSH6P52701 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC24.28■■□□□ 1.48
MSH6P52701 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
MSH6P52701 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
MSH6P52701 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
MSH6P52701 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
MSH6P52701 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
MSH6P52701 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
MSH6P52701 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
MSH6P52701 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
MSH6P52701 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC24.28■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms