Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
LIG3P49916 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.64■□□□□ 0.58
LIG3P49916 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
LIG3P49916 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
LIG3P49916 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.64■□□□□ 0.57
LIG3P49916 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.64■□□□□ 0.57
LIG3P49916 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.64■□□□□ 0.57
LIG3P49916 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
LIG3P49916 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
LIG3P49916 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.64■□□□□ 0.57
LIG3P49916 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
LIG3P49916 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 STARP1-201ENST00000397973 869 ntBASIC18.64■□□□□ 0.57
LIG3P49916 AL031133.1-201ENST00000406807 723 ntBASIC18.64■□□□□ 0.57
LIG3P49916 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
LIG3P49916 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
LIG3P49916 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.64■□□□□ 0.57
LIG3P49916 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
LIG3P49916 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
LIG3P49916 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 PCDHB19P-201ENST00000570871 2371 ntBASIC18.64■□□□□ 0.57
LIG3P49916 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.64■□□□□ 0.57
LIG3P49916 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.64■□□□□ 0.57
LIG3P49916 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
LIG3P49916 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
LIG3P49916 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.64■□□□□ 0.57
LIG3P49916 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.64■□□□□ 0.57
LIG3P49916 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIG3P49916 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.64■□□□□ 0.57
LIG3P49916 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
LIG3P49916 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
LIG3P49916 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.63■□□□□ 0.57
LIG3P49916 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.63■□□□□ 0.57
LIG3P49916 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
LIG3P49916 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
LIG3P49916 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 KRT18P23-201ENST00000435622 1283 ntBASIC18.63■□□□□ 0.57
LIG3P49916 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.63■□□□□ 0.57
LIG3P49916 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 SEC1P-202ENST00000473944 940 ntBASIC18.63■□□□□ 0.57
LIG3P49916 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.63■□□□□ 0.57
LIG3P49916 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.63■□□□□ 0.57
LIG3P49916 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.63■□□□□ 0.57
LIG3P49916 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.63■□□□□ 0.57
LIG3P49916 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
LIG3P49916 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
LIG3P49916 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
LIG3P49916 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
LIG3P49916 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
LIG3P49916 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIG3P49916 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIG3P49916 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIG3P49916 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIG3P49916 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.62■□□□□ 0.57
LIG3P49916 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
LIG3P49916 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
LIG3P49916 SPDYE15P-201ENST00000424157 909 ntBASIC18.62■□□□□ 0.57
LIG3P49916 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms