Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
SOX2P48431 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SOX2P48431 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX2P48431 HLA-J-201ENST00000462773 1622 ntBASIC15.61■□□□□ 0.09
SOX2P48431 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC15.61■□□□□ 0.09
SOX2P48431 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX2P48431 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX2P48431 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SOX2P48431 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
SOX2P48431 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC15.61■□□□□ 0.09
SOX2P48431 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX2P48431 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC15.61■□□□□ 0.09
SOX2P48431 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX2P48431 UNC93B2-201ENST00000285383 730 ntBASIC15.61■□□□□ 0.09
SOX2P48431 AL390955.1-201ENST00000428694 934 ntBASIC15.61■□□□□ 0.09
SOX2P48431 RBM17P1-201ENST00000453646 1190 ntBASIC15.61■□□□□ 0.09
SOX2P48431 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC15.61■□□□□ 0.09
SOX2P48431 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC15.61■□□□□ 0.09
SOX2P48431 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC15.61■□□□□ 0.09
SOX2P48431 REEP1-209ENST00000541910 969 ntTSL 2 BASIC15.61■□□□□ 0.09
SOX2P48431 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC15.61■□□□□ 0.09
SOX2P48431 ETFA-216ENST00000560726 942 ntTSL 3 BASIC15.61■□□□□ 0.09
SOX2P48431 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC15.61■□□□□ 0.09
SOX2P48431 AC116562.4-202ENST00000641738 218 ntBASIC15.61■□□□□ 0.09
SOX2P48431 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
SOX2P48431 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC15.61■□□□□ 0.09
SOX2P48431 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX2P48431 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX2P48431 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC15.61■□□□□ 0.09
SOX2P48431 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX2P48431 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX2P48431 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX2P48431 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.61■□□□□ 0.09
SOX2P48431 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX2P48431 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC15.61■□□□□ 0.09
SOX2P48431 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX2P48431 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC15.61■□□□□ 0.09
SOX2P48431 AL121761.2-201ENST00000598007 1648 ntBASIC15.61■□□□□ 0.09
SOX2P48431 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX2P48431 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.61■□□□□ 0.09
SOX2P48431 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX2P48431 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX2P48431 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
SOX2P48431 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX2P48431 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
SOX2P48431 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.6■□□□□ 0.09
SOX2P48431 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SOX2P48431 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX2P48431 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX2P48431 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX2P48431 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX2P48431 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC15.6■□□□□ 0.09
SOX2P48431 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC15.6■□□□□ 0.09
SOX2P48431 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SOX2P48431 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC15.6■□□□□ 0.09
SOX2P48431 AC009949.1-201ENST00000623048 1830 ntBASIC15.6■□□□□ 0.09
SOX2P48431 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX2P48431 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX2P48431 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC15.6■□□□□ 0.09
SOX2P48431 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX2P48431 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX2P48431 AC007663.1-201ENST00000438948 1240 ntBASIC15.6■□□□□ 0.09
SOX2P48431 AC098590.1-201ENST00000468126 897 ntBASIC15.6■□□□□ 0.09
SOX2P48431 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC15.6■□□□□ 0.09
SOX2P48431 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC15.6■□□□□ 0.09
SOX2P48431 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC15.6■□□□□ 0.09
SOX2P48431 AP000525.1-201ENST00000608286 694 ntBASIC15.6■□□□□ 0.09
SOX2P48431 AC024243.1-201ENST00000609234 778 ntBASIC15.6■□□□□ 0.09
SOX2P48431 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX2P48431 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC15.6■□□□□ 0.09
SOX2P48431 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX2P48431 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SOX2P48431 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC15.6■□□□□ 0.09
SOX2P48431 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
SOX2P48431 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX2P48431 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
SOX2P48431 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC15.6■□□□□ 0.09
SOX2P48431 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC15.6■□□□□ 0.09
SOX2P48431 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SOX2P48431 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SOX2P48431 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.6■□□□□ 0.09
SOX2P48431 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX2P48431 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX2P48431 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.59■□□□□ 0.09
SOX2P48431 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SOX2P48431 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SOX2P48431 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SOX2P48431 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC15.59■□□□□ 0.09
SOX2P48431 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
SOX2P48431 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
SOX2P48431 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC15.59■□□□□ 0.09
SOX2P48431 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SOX2P48431 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC15.59■□□□□ 0.09
SOX2P48431 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
SOX2P48431 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SOX2P48431 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
SOX2P48431 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SOX2P48431 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SOX2P48431 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SOX2P48431 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms