Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HNF4AP41235 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
HNF4AP41235 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HNF4AP41235 AC133963.1-201ENST00000504166 1679 ntBASIC17.2■□□□□ 0.34
HNF4AP41235 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HNF4AP41235 AL355312.1-201ENST00000407115 2176 ntBASIC17.19■□□□□ 0.34
HNF4AP41235 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HNF4AP41235 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HNF4AP41235 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HNF4AP41235 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.19■□□□□ 0.34
HNF4AP41235 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
HNF4AP41235 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HNF4AP41235 MTCL1P1-201ENST00000446207 792 ntBASIC17.19■□□□□ 0.34
HNF4AP41235 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HNF4AP41235 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.19■□□□□ 0.34
HNF4AP41235 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.19■□□□□ 0.34
HNF4AP41235 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HNF4AP41235 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
HNF4AP41235 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
HNF4AP41235 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.19■□□□□ 0.34
HNF4AP41235 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
HNF4AP41235 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.19■□□□□ 0.34
HNF4AP41235 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
HNF4AP41235 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
HNF4AP41235 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HNF4AP41235 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
HNF4AP41235 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HNF4AP41235 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
HNF4AP41235 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HNF4AP41235 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.19■□□□□ 0.34
HNF4AP41235 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HNF4AP41235 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.19■□□□□ 0.34
HNF4AP41235 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
HNF4AP41235 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HNF4AP41235 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.19■□□□□ 0.34
HNF4AP41235 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
HNF4AP41235 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
HNF4AP41235 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
HNF4AP41235 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HNF4AP41235 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.18■□□□□ 0.34
HNF4AP41235 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
HNF4AP41235 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.18■□□□□ 0.34
HNF4AP41235 AC068472.1-201ENST00000474589 881 ntBASIC17.18■□□□□ 0.34
HNF4AP41235 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.18■□□□□ 0.34
HNF4AP41235 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.18■□□□□ 0.34
HNF4AP41235 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.18■□□□□ 0.34
HNF4AP41235 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.18■□□□□ 0.34
HNF4AP41235 LINC01451-201ENST00000623792 534 ntBASIC17.18■□□□□ 0.34
HNF4AP41235 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.18■□□□□ 0.34
HNF4AP41235 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HNF4AP41235 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HNF4AP41235 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
HNF4AP41235 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HNF4AP41235 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.18■□□□□ 0.34
HNF4AP41235 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
HNF4AP41235 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HNF4AP41235 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HNF4AP41235 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.18■□□□□ 0.34
HNF4AP41235 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HNF4AP41235 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HNF4AP41235 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HNF4AP41235 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
HNF4AP41235 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HNF4AP41235 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HNF4AP41235 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HNF4AP41235 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
HNF4AP41235 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
HNF4AP41235 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HNF4AP41235 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.17■□□□□ 0.34
HNF4AP41235 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HNF4AP41235 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HNF4AP41235 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HNF4AP41235 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
HNF4AP41235 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HNF4AP41235 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
HNF4AP41235 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HNF4AP41235 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HNF4AP41235 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HNF4AP41235 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.17■□□□□ 0.34
HNF4AP41235 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.17■□□□□ 0.34
HNF4AP41235 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.17■□□□□ 0.34
HNF4AP41235 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HNF4AP41235 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
HNF4AP41235 AC116407.4-201ENST00000623319 1061 ntBASIC17.17■□□□□ 0.34
HNF4AP41235 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HNF4AP41235 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
HNF4AP41235 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HNF4AP41235 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HNF4AP41235 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
HNF4AP41235 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HNF4AP41235 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HNF4AP41235 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
HNF4AP41235 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.17■□□□□ 0.34
HNF4AP41235 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HNF4AP41235 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
HNF4AP41235 LINC00304-203ENST00000565008 1864 ntBASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms