Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTPN4P29074 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTPN4P29074 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTPN4P29074 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.81■□□□□ 0.44
PTPN4P29074 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
PTPN4P29074 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN4P29074 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN4P29074 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN4P29074 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
PTPN4P29074 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN4P29074 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN4P29074 AC005332.1-201ENST00000577698 1310 ntBASIC17.8■□□□□ 0.44
PTPN4P29074 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN4P29074 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN4P29074 UBALD1-205ENST00000590891 2641 ntBASIC17.8■□□□□ 0.44
PTPN4P29074 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN4P29074 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN4P29074 AC011270.2-201ENST00000624293 2550 ntBASIC17.8■□□□□ 0.44
PTPN4P29074 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
PTPN4P29074 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.8■□□□□ 0.44
PTPN4P29074 AC112907.2-201ENST00000448639 330 ntBASIC17.8■□□□□ 0.44
PTPN4P29074 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.8■□□□□ 0.44
PTPN4P29074 KRT18P56-201ENST00000507275 550 ntBASIC17.8■□□□□ 0.44
PTPN4P29074 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.8■□□□□ 0.44
PTPN4P29074 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC17.8■□□□□ 0.44
PTPN4P29074 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.8■□□□□ 0.44
PTPN4P29074 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN4P29074 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.8■□□□□ 0.44
PTPN4P29074 AC116407.4-201ENST00000623319 1061 ntBASIC17.8■□□□□ 0.44
PTPN4P29074 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.8■□□□□ 0.44
PTPN4P29074 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN4P29074 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN4P29074 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN4P29074 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN4P29074 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN4P29074 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN4P29074 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN4P29074 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN4P29074 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN4P29074 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.8■□□□□ 0.44
PTPN4P29074 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN4P29074 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTPN4P29074 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN4P29074 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.79■□□□□ 0.44
PTPN4P29074 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.79■□□□□ 0.44
PTPN4P29074 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
PTPN4P29074 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.79■□□□□ 0.44
PTPN4P29074 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN4P29074 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.79■□□□□ 0.44
PTPN4P29074 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN4P29074 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN4P29074 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.79■□□□□ 0.44
PTPN4P29074 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN4P29074 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN4P29074 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN4P29074 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN4P29074 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
PTPN4P29074 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.79■□□□□ 0.44
PTPN4P29074 VENTXP5-201ENST00000523979 775 ntBASIC17.79■□□□□ 0.44
PTPN4P29074 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.79■□□□□ 0.44
PTPN4P29074 AL136038.3-201ENST00000561909 1096 ntBASIC17.79■□□□□ 0.44
PTPN4P29074 CR769767.2-201ENST00000622735 460 ntBASIC17.79■□□□□ 0.44
PTPN4P29074 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN4P29074 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN4P29074 AC008894.3-201ENST00000624324 3103 ntBASIC17.79■□□□□ 0.44
PTPN4P29074 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN4P29074 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN4P29074 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
PTPN4P29074 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN4P29074 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
PTPN4P29074 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
PTPN4P29074 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN4P29074 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN4P29074 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.79■□□□□ 0.44
PTPN4P29074 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.79■□□□□ 0.44
PTPN4P29074 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN4P29074 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PTPN4P29074 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN4P29074 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN4P29074 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.78■□□□□ 0.44
PTPN4P29074 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
PTPN4P29074 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN4P29074 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.78■□□□□ 0.44
PTPN4P29074 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.78■□□□□ 0.44
PTPN4P29074 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PTPN4P29074 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.78■□□□□ 0.44
PTPN4P29074 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PTPN4P29074 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN4P29074 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
PTPN4P29074 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.78■□□□□ 0.44
PTPN4P29074 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN4P29074 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.78■□□□□ 0.44
PTPN4P29074 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN4P29074 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.78■□□□□ 0.44
PTPN4P29074 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC17.78■□□□□ 0.44
PTPN4P29074 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN4P29074 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.78■□□□□ 0.44
PTPN4P29074 AC093458.2-201ENST00000623150 629 ntBASIC17.78■□□□□ 0.44
PTPN4P29074 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.78■□□□□ 0.44
PTPN4P29074 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms