Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
VIMP08670 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
VIMP08670 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VIMP08670 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VIMP08670 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VIMP08670 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
VIMP08670 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VIMP08670 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.82■□□□□ 0.44
VIMP08670 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VIMP08670 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC17.82■□□□□ 0.44
VIMP08670 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC17.82■□□□□ 0.44
VIMP08670 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VIMP08670 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC17.82■□□□□ 0.44
VIMP08670 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
VIMP08670 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.82■□□□□ 0.44
VIMP08670 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
VIMP08670 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VIMP08670 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VIMP08670 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
VIMP08670 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
VIMP08670 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VIMP08670 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
VIMP08670 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VIMP08670 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
VIMP08670 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VIMP08670 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
VIMP08670 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VIMP08670 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
VIMP08670 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
VIMP08670 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VIMP08670 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VIMP08670 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.81■□□□□ 0.44
VIMP08670 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VIMP08670 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VIMP08670 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VIMP08670 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VIMP08670 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
VIMP08670 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VIMP08670 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VIMP08670 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.81■□□□□ 0.44
VIMP08670 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VIMP08670 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VIMP08670 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.81■□□□□ 0.44
VIMP08670 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
VIMP08670 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VIMP08670 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VIMP08670 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VIMP08670 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
VIMP08670 MIR935-201ENST00000401179 91 ntBASIC17.81■□□□□ 0.44
VIMP08670 DUTP2-201ENST00000519164 463 ntBASIC17.81■□□□□ 0.44
VIMP08670 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.81■□□□□ 0.44
VIMP08670 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.81■□□□□ 0.44
VIMP08670 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC17.81■□□□□ 0.44
VIMP08670 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.81■□□□□ 0.44
VIMP08670 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC17.81■□□□□ 0.44
VIMP08670 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VIMP08670 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VIMP08670 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC17.81■□□□□ 0.44
VIMP08670 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.81■□□□□ 0.44
VIMP08670 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.81■□□□□ 0.44
VIMP08670 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
VIMP08670 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VIMP08670 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VIMP08670 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
VIMP08670 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
VIMP08670 PGR-209ENST00000617858 2816 ntTSL 5 BASIC17.8■□□□□ 0.44
VIMP08670 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.8■□□□□ 0.44
VIMP08670 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VIMP08670 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
VIMP08670 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VIMP08670 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.8■□□□□ 0.44
VIMP08670 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
VIMP08670 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
VIMP08670 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.8■□□□□ 0.44
VIMP08670 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VIMP08670 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
VIMP08670 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VIMP08670 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.8■□□□□ 0.44
VIMP08670 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VIMP08670 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
VIMP08670 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC17.8■□□□□ 0.44
VIMP08670 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC17.8■□□□□ 0.44
VIMP08670 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.8■□□□□ 0.44
VIMP08670 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.8■□□□□ 0.44
VIMP08670 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
VIMP08670 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.8■□□□□ 0.44
VIMP08670 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.8■□□□□ 0.44
VIMP08670 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.8■□□□□ 0.44
VIMP08670 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.8■□□□□ 0.44
VIMP08670 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
VIMP08670 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.8■□□□□ 0.44
VIMP08670 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
VIMP08670 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.8■□□□□ 0.44
VIMP08670 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
VIMP08670 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
VIMP08670 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VIMP08670 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
VIMP08670 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VIMP08670 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
VIMP08670 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms