Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.26■□□□□ 0.35
TNFP01375 AC132938.5-201ENST00000624980 1813 ntBASIC17.26■□□□□ 0.35
TNFP01375 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.26■□□□□ 0.35
TNFP01375 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFP01375 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFP01375 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.25■□□□□ 0.35
TNFP01375 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
TNFP01375 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TNFP01375 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFP01375 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TNFP01375 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TNFP01375 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFP01375 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFP01375 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TNFP01375 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFP01375 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.25■□□□□ 0.35
TNFP01375 AC104109.2-201ENST00000602919 1418 ntBASIC17.25■□□□□ 0.35
TNFP01375 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFP01375 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
TNFP01375 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.25■□□□□ 0.35
TNFP01375 MIR940-201ENST00000401276 94 ntBASIC17.25■□□□□ 0.35
TNFP01375 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.25■□□□□ 0.35
TNFP01375 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
TNFP01375 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.25■□□□□ 0.35
TNFP01375 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.25■□□□□ 0.35
TNFP01375 STK19B-204ENST00000512515 211 ntBASIC17.25■□□□□ 0.35
TNFP01375 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.25■□□□□ 0.35
TNFP01375 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.25■□□□□ 0.35
TNFP01375 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
TNFP01375 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.25■□□□□ 0.35
TNFP01375 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.25■□□□□ 0.35
TNFP01375 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFP01375 TERC-201ENST00000602385 541 ntBASIC17.25■□□□□ 0.35
TNFP01375 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.25■□□□□ 0.35
TNFP01375 MIR1199-201ENST00000621445 119 ntBASIC17.25■□□□□ 0.35
TNFP01375 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TNFP01375 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.25■□□□□ 0.35
TNFP01375 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFP01375 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFP01375 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
TNFP01375 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFP01375 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFP01375 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
TNFP01375 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TNFP01375 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.25■□□□□ 0.35
TNFP01375 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFP01375 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFP01375 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TNFP01375 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.24■□□□□ 0.35
TNFP01375 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.24■□□□□ 0.35
TNFP01375 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.24■□□□□ 0.35
TNFP01375 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.24■□□□□ 0.35
TNFP01375 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.24■□□□□ 0.35
TNFP01375 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
TNFP01375 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TNFP01375 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.24■□□□□ 0.35
TNFP01375 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TNFP01375 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TNFP01375 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TNFP01375 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TNFP01375 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.24■□□□□ 0.35
TNFP01375 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.24■□□□□ 0.35
TNFP01375 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.24■□□□□ 0.35
TNFP01375 RNA5SP415-201ENST00000517246 115 ntBASIC17.24■□□□□ 0.35
TNFP01375 AC145285.3-201ENST00000564603 959 ntBASIC17.24■□□□□ 0.35
TNFP01375 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.24■□□□□ 0.35
TNFP01375 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.24■□□□□ 0.35
TNFP01375 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.24■□□□□ 0.35
TNFP01375 AC023511.2-201ENST00000618803 211 ntBASIC17.24■□□□□ 0.35
TNFP01375 AL589182.2-201ENST00000619332 1049 ntBASIC17.24■□□□□ 0.35
TNFP01375 PGM5P2-202ENST00000637225 1043 ntBASIC17.24■□□□□ 0.35
TNFP01375 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC17.24■□□□□ 0.35
TNFP01375 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.24■□□□□ 0.35
TNFP01375 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TNFP01375 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TNFP01375 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TNFP01375 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TNFP01375 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TNFP01375 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.24■□□□□ 0.35
TNFP01375 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TNFP01375 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
TNFP01375 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TNFP01375 AP002414.3-201ENST00000589352 1468 ntBASIC17.24■□□□□ 0.35
TNFP01375 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TNFP01375 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TNFP01375 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TNFP01375 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.24■□□□□ 0.35
TNFP01375 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TNFP01375 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TNFP01375 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TNFP01375 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TNFP01375 AC104581.1-202ENST00000635932 2618 ntBASIC17.23■□□□□ 0.35
TNFP01375 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
TNFP01375 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
TNFP01375 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TNFP01375 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
TNFP01375 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.23■□□□□ 0.35
TNFP01375 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
TNFP01375 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
TNFP01375 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms