Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
CACNA1FO60840 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC22.15■■□□□ 1.14
CACNA1FO60840 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC22.15■■□□□ 1.14
CACNA1FO60840 AL139424.1-201ENST00000607572 797 ntBASIC22.15■■□□□ 1.14
CACNA1FO60840 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC22.15■■□□□ 1.14
CACNA1FO60840 AL589182.2-201ENST00000619332 1049 ntBASIC22.15■■□□□ 1.14
CACNA1FO60840 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
CACNA1FO60840 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
CACNA1FO60840 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
CACNA1FO60840 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC22.15■■□□□ 1.14
CACNA1FO60840 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CACNA1FO60840 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
CACNA1FO60840 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC22.14■■□□□ 1.14
CACNA1FO60840 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
CACNA1FO60840 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC22.14■■□□□ 1.14
CACNA1FO60840 ABBA01031661.1-201ENST00000634362 1253 ntBASIC22.14■■□□□ 1.14
CACNA1FO60840 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.14
CACNA1FO60840 BOC-212ENST00000485230 2173 ntTSL 2 BASIC22.14■■□□□ 1.14
CACNA1FO60840 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
CACNA1FO60840 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC22.14■■□□□ 1.13
CACNA1FO60840 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC22.14■■□□□ 1.13
CACNA1FO60840 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CACNA1FO60840 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC22.14■■□□□ 1.13
CACNA1FO60840 AC016396.2-201ENST00000562575 1417 ntBASIC22.14■■□□□ 1.13
CACNA1FO60840 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC22.14■■□□□ 1.13
CACNA1FO60840 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
CACNA1FO60840 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
CACNA1FO60840 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
CACNA1FO60840 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CACNA1FO60840 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC22.14■■□□□ 1.13
CACNA1FO60840 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC22.14■■□□□ 1.13
CACNA1FO60840 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CACNA1FO60840 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CACNA1FO60840 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CACNA1FO60840 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CACNA1FO60840 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC22.13■■□□□ 1.13
CACNA1FO60840 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC22.13■■□□□ 1.13
CACNA1FO60840 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC22.13■■□□□ 1.13
CACNA1FO60840 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC22.13■■□□□ 1.13
CACNA1FO60840 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC22.13■■□□□ 1.13
CACNA1FO60840 AC117500.6-201ENST00000624871 588 ntBASIC22.13■■□□□ 1.13
CACNA1FO60840 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
CACNA1FO60840 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CACNA1FO60840 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC22.13■■□□□ 1.13
CACNA1FO60840 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC22.13■■□□□ 1.13
CACNA1FO60840 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC22.13■■□□□ 1.13
CACNA1FO60840 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CACNA1FO60840 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC22.13■■□□□ 1.13
CACNA1FO60840 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CACNA1FO60840 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
CACNA1FO60840 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC22.12■■□□□ 1.13
CACNA1FO60840 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC22.12■■□□□ 1.13
CACNA1FO60840 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC22.12■■□□□ 1.13
CACNA1FO60840 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC22.12■■□□□ 1.13
CACNA1FO60840 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC22.12■■□□□ 1.13
CACNA1FO60840 AC116353.5-201ENST00000638148 1699 ntBASIC22.12■■□□□ 1.13
CACNA1FO60840 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CACNA1FO60840 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
CACNA1FO60840 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
CACNA1FO60840 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC22.12■■□□□ 1.13
CACNA1FO60840 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC22.12■■□□□ 1.13
CACNA1FO60840 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CACNA1FO60840 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC22.12■■□□□ 1.13
CACNA1FO60840 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
CACNA1FO60840 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC22.12■■□□□ 1.13
CACNA1FO60840 AC108073.2-201ENST00000464002 357 ntBASIC22.12■■□□□ 1.13
CACNA1FO60840 RNPS1P1-201ENST00000507437 918 ntBASIC22.12■■□□□ 1.13
CACNA1FO60840 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC22.12■■□□□ 1.13
CACNA1FO60840 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC22.12■■□□□ 1.13
CACNA1FO60840 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
CACNA1FO60840 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CACNA1FO60840 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
CACNA1FO60840 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC22.11■■□□□ 1.13
CACNA1FO60840 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
CACNA1FO60840 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
CACNA1FO60840 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CACNA1FO60840 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CACNA1FO60840 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CACNA1FO60840 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
CACNA1FO60840 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC22.11■■□□□ 1.13
CACNA1FO60840 AC006504.4-201ENST00000592118 1568 ntBASIC22.11■■□□□ 1.13
CACNA1FO60840 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
CACNA1FO60840 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
CACNA1FO60840 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC22.11■■□□□ 1.13
CACNA1FO60840 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CACNA1FO60840 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CACNA1FO60840 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC22.11■■□□□ 1.13
CACNA1FO60840 AC034105.1-201ENST00000563488 319 ntBASIC22.11■■□□□ 1.13
CACNA1FO60840 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC22.11■■□□□ 1.13
CACNA1FO60840 PGM5P2-202ENST00000637225 1043 ntBASIC22.11■■□□□ 1.13
CACNA1FO60840 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CACNA1FO60840 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC22.11■■□□□ 1.13
CACNA1FO60840 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CACNA1FO60840 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CACNA1FO60840 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC22.11■■□□□ 1.13
CACNA1FO60840 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC22.11■■□□□ 1.13
CACNA1FO60840 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC22.11■■□□□ 1.13
CACNA1FO60840 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
CACNA1FO60840 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
CACNA1FO60840 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC22.11■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms