Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
UPK1AO00322 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.8■□□□□ 0.28
UPK1AO00322 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.8■□□□□ 0.28
UPK1AO00322 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.8■□□□□ 0.28
UPK1AO00322 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
UPK1AO00322 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
UPK1AO00322 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
UPK1AO00322 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
UPK1AO00322 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
UPK1AO00322 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
UPK1AO00322 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
UPK1AO00322 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
UPK1AO00322 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
UPK1AO00322 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
UPK1AO00322 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
UPK1AO00322 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
UPK1AO00322 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
UPK1AO00322 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.8■□□□□ 0.28
UPK1AO00322 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
UPK1AO00322 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
UPK1AO00322 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
UPK1AO00322 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
UPK1AO00322 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.79■□□□□ 0.28
UPK1AO00322 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
UPK1AO00322 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
UPK1AO00322 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.79■□□□□ 0.28
UPK1AO00322 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.79■□□□□ 0.28
UPK1AO00322 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
UPK1AO00322 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
UPK1AO00322 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
UPK1AO00322 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
UPK1AO00322 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.79■□□□□ 0.28
UPK1AO00322 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.79■□□□□ 0.28
UPK1AO00322 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
UPK1AO00322 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.79■□□□□ 0.28
UPK1AO00322 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.79■□□□□ 0.28
UPK1AO00322 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.79■□□□□ 0.28
UPK1AO00322 SAPCD2P2-201ENST00000431719 1174 ntBASIC16.79■□□□□ 0.28
UPK1AO00322 AL671277.2-201ENST00000458060 996 ntBASIC16.79■□□□□ 0.28
UPK1AO00322 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.79■□□□□ 0.28
UPK1AO00322 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.79■□□□□ 0.28
UPK1AO00322 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.79■□□□□ 0.28
UPK1AO00322 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.79■□□□□ 0.28
UPK1AO00322 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.79■□□□□ 0.28
UPK1AO00322 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC16.79■□□□□ 0.28
UPK1AO00322 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
UPK1AO00322 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
UPK1AO00322 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
UPK1AO00322 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
UPK1AO00322 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
UPK1AO00322 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
UPK1AO00322 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.79■□□□□ 0.28
UPK1AO00322 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
UPK1AO00322 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
UPK1AO00322 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.79■□□□□ 0.28
UPK1AO00322 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
UPK1AO00322 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.79■□□□□ 0.28
UPK1AO00322 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.78■□□□□ 0.28
UPK1AO00322 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
UPK1AO00322 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC16.78■□□□□ 0.28
UPK1AO00322 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
UPK1AO00322 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
UPK1AO00322 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
UPK1AO00322 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
UPK1AO00322 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
UPK1AO00322 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.78■□□□□ 0.28
UPK1AO00322 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.78■□□□□ 0.28
UPK1AO00322 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
UPK1AO00322 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
UPK1AO00322 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
UPK1AO00322 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.78■□□□□ 0.28
UPK1AO00322 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
UPK1AO00322 UBALD1-205ENST00000590891 2641 ntBASIC16.78■□□□□ 0.28
UPK1AO00322 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
UPK1AO00322 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
UPK1AO00322 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
UPK1AO00322 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
UPK1AO00322 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
UPK1AO00322 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
UPK1AO00322 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.78■□□□□ 0.28
UPK1AO00322 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.78■□□□□ 0.28
UPK1AO00322 GPR32P1-201ENST00000601788 811 ntBASIC16.78■□□□□ 0.28
UPK1AO00322 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
UPK1AO00322 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
UPK1AO00322 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
UPK1AO00322 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
UPK1AO00322 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
UPK1AO00322 AL353692.3-201ENST00000407031 1396 ntBASIC16.77■□□□□ 0.28
UPK1AO00322 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
UPK1AO00322 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
UPK1AO00322 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
UPK1AO00322 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
UPK1AO00322 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
UPK1AO00322 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
UPK1AO00322 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
UPK1AO00322 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.77■□□□□ 0.28
UPK1AO00322 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
UPK1AO00322 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
UPK1AO00322 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
UPK1AO00322 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms