Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
TRIM49D1C9J1S8 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 AL118508.1-201ENST00000613502 2345 ntBASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 KRT18P65-201ENST00000439811 1286 ntBASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 FAM87A-204ENST00000613235 858 ntBASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 AC010947.1-201ENST00000623454 693 ntBASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 AC106886.4-201ENST00000623557 2502 ntBASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM49D1C9J1S8 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 SNORA78-201ENST00000459373 127 ntBASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 AL512604.3-201ENST00000569583 964 ntBASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
TRIM49D1C9J1S8 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM49D1C9J1S8 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM49D1C9J1S8 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM49D1C9J1S8 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM49D1C9J1S8 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM49D1C9J1S8 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM49D1C9J1S8 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM49D1C9J1S8 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
TRIM49D1C9J1S8 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM49D1C9J1S8 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms