Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 FDX1P1-201ENST00000449115 551 ntBASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 AC104819.1-201ENST00000504587 486 ntBASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 GUSBP12-201ENST00000513727 720 ntBASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 AC009102.3-201ENST00000623118 1491 ntBASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 TOB2P1-201ENST00000469761 992 ntBASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 UNC93B7-201ENST00000509439 705 ntBASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 AL353692.3-201ENST00000407031 1396 ntBASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.38■□□□□ 0.37
PCDHB3Q9Y5E6 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 GMCL1P1-201ENST00000463439 1581 ntBASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 TSPY19P-201ENST00000418461 509 ntBASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 TSPY18P-201ENST00000441642 509 ntBASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHB3Q9Y5E6 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHB3Q9Y5E6 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
PCDHB3Q9Y5E6 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.36■□□□□ 0.37
PCDHB3Q9Y5E6 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms