Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 AC092338.2-201ENST00000568827 1415 ntBASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
UBE2D4Q9Y2X8 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 ABHD17AP1-201ENST00000358206 933 ntBASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 RPS2P55-201ENST00000397318 883 ntBASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 AC107956.1-201ENST00000494359 873 ntBASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 AC113410.3-201ENST00000623366 203 ntBASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC12.35□□□□□ -0.43
UBE2D4Q9Y2X8 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC12.34□□□□□ -0.43
UBE2D4Q9Y2X8 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC12.34□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms