Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
NOTCH3Q9UM47 AC004817.3-201ENST00000602957 2129 ntBASIC13.71□□□□□ -0.22
NOTCH3Q9UM47 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
NOTCH3Q9UM47 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC13.71□□□□□ -0.22
NOTCH3Q9UM47 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
NOTCH3Q9UM47 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
NOTCH3Q9UM47 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC13.71□□□□□ -0.22
NOTCH3Q9UM47 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC13.71□□□□□ -0.22
NOTCH3Q9UM47 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
NOTCH3Q9UM47 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
NOTCH3Q9UM47 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
NOTCH3Q9UM47 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 AC023274.1-201ENST00000418278 595 ntBASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 MSRA-206ENST00000521209 814 ntTSL 3 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 COBL-210ENST00000632460 1941 ntTSL 5 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 SDHAP2-201ENST00000455183 2001 ntBASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 AR-207ENST00000612010 3896 ntTSL 5 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 ZNF259P1-201ENST00000407656 1365 ntBASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 MED15P5-201ENST00000423150 992 ntBASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 AC012640.2-201ENST00000561606 901 ntBASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 LINC00602-201ENST00000629776 2065 ntBASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
NOTCH3Q9UM47 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 HIST2H3DP1-201ENST00000401004 416 ntBASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 FIS1-203ENST00000442303 631 ntTSL 3 BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 AL024508.2-201ENST00000607749 1894 ntBASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC13.69□□□□□ -0.22
NOTCH3Q9UM47 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms