Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
SHROOM4Q9ULL8 AC104581.1-202ENST00000635932 2618 ntBASIC33.47■■■□□ 2.95
SHROOM4Q9ULL8 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC33.46■■■□□ 2.95
SHROOM4Q9ULL8 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
SHROOM4Q9ULL8 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
SHROOM4Q9ULL8 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
SHROOM4Q9ULL8 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC33.46■■■□□ 2.95
SHROOM4Q9ULL8 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC33.46■■■□□ 2.95
SHROOM4Q9ULL8 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
SHROOM4Q9ULL8 ARTN-206ENST00000472435 402 ntTSL 3 BASIC33.46■■■□□ 2.95
SHROOM4Q9ULL8 RBM7-207ENST00000544582 692 ntTSL 3 BASIC33.46■■■□□ 2.95
SHROOM4Q9ULL8 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
SHROOM4Q9ULL8 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC33.46■■■□□ 2.95
SHROOM4Q9ULL8 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
SHROOM4Q9ULL8 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC33.46■■■□□ 2.95
SHROOM4Q9ULL8 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC33.45■■■□□ 2.95
SHROOM4Q9ULL8 AC004408.2-201ENST00000623613 2777 ntBASIC33.45■■■□□ 2.95
SHROOM4Q9ULL8 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC33.45■■■□□ 2.95
SHROOM4Q9ULL8 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC33.45■■■□□ 2.95
SHROOM4Q9ULL8 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC33.45■■■□□ 2.95
SHROOM4Q9ULL8 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC33.45■■■□□ 2.95
SHROOM4Q9ULL8 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC33.45■■■□□ 2.95
SHROOM4Q9ULL8 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC33.45■■■□□ 2.95
SHROOM4Q9ULL8 AC093512.1-201ENST00000617969 520 ntBASIC33.45■■■□□ 2.95
SHROOM4Q9ULL8 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC33.45■■■□□ 2.95
SHROOM4Q9ULL8 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC33.45■■■□□ 2.95
SHROOM4Q9ULL8 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC33.45■■■□□ 2.94
SHROOM4Q9ULL8 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC33.45■■■□□ 2.94
SHROOM4Q9ULL8 TBC1D3P5-201ENST00000579401 1545 ntBASIC33.45■■■□□ 2.94
SHROOM4Q9ULL8 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC33.45■■■□□ 2.94
SHROOM4Q9ULL8 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC33.45■■■□□ 2.94
SHROOM4Q9ULL8 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC33.45■■■□□ 2.94
SHROOM4Q9ULL8 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC33.44■■■□□ 2.94
SHROOM4Q9ULL8 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC33.44■■■□□ 2.94
SHROOM4Q9ULL8 TAF8-206ENST00000472818 719 ntTSL 2 BASIC33.44■■■□□ 2.94
SHROOM4Q9ULL8 AC190387.1-201ENST00000551683 408 ntBASIC33.44■■■□□ 2.94
SHROOM4Q9ULL8 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC33.44■■■□□ 2.94
SHROOM4Q9ULL8 AC008667.4-201ENST00000607370 168 ntBASIC33.44■■■□□ 2.94
SHROOM4Q9ULL8 AC004706.3-202ENST00000621574 984 ntBASIC33.44■■■□□ 2.94
SHROOM4Q9ULL8 AJ011932.1-201ENST00000621707 465 ntBASIC33.44■■■□□ 2.94
SHROOM4Q9ULL8 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC33.44■■■□□ 2.94
SHROOM4Q9ULL8 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC33.44■■■□□ 2.94
SHROOM4Q9ULL8 POR-209ENST00000439269 1858 ntTSL 2 BASIC33.44■■■□□ 2.94
SHROOM4Q9ULL8 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC33.44■■■□□ 2.94
SHROOM4Q9ULL8 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC33.44■■■□□ 2.94
SHROOM4Q9ULL8 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC33.44■■■□□ 2.94
SHROOM4Q9ULL8 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC33.44■■■□□ 2.94
SHROOM4Q9ULL8 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC33.44■■■□□ 2.94
SHROOM4Q9ULL8 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC33.44■■■□□ 2.94
SHROOM4Q9ULL8 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC33.44■■■□□ 2.94
SHROOM4Q9ULL8 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC33.44■■■□□ 2.94
SHROOM4Q9ULL8 AC010654.1-201ENST00000615722 808 ntBASIC33.44■■■□□ 2.94
SHROOM4Q9ULL8 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
SHROOM4Q9ULL8 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
SHROOM4Q9ULL8 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC33.43■■■□□ 2.94
SHROOM4Q9ULL8 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC33.43■■■□□ 2.94
SHROOM4Q9ULL8 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
SHROOM4Q9ULL8 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
SHROOM4Q9ULL8 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
SHROOM4Q9ULL8 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC33.43■■■□□ 2.94
SHROOM4Q9ULL8 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC33.43■■■□□ 2.94
SHROOM4Q9ULL8 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
SHROOM4Q9ULL8 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC33.43■■■□□ 2.94
SHROOM4Q9ULL8 METTL26-204ENST00000397665 558 ntTSL 2 BASIC33.43■■■□□ 2.94
SHROOM4Q9ULL8 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC33.43■■■□□ 2.94
SHROOM4Q9ULL8 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC33.43■■■□□ 2.94
SHROOM4Q9ULL8 MIR4751-201ENST00000578027 74 ntBASIC33.43■■■□□ 2.94
SHROOM4Q9ULL8 AC138761.1-201ENST00000584393 385 ntBASIC33.43■■■□□ 2.94
SHROOM4Q9ULL8 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC33.43■■■□□ 2.94
SHROOM4Q9ULL8 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC33.43■■■□□ 2.94
SHROOM4Q9ULL8 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
SHROOM4Q9ULL8 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC33.42■■■□□ 2.94
SHROOM4Q9ULL8 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC33.42■■■□□ 2.94
SHROOM4Q9ULL8 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC33.42■■■□□ 2.94
SHROOM4Q9ULL8 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC33.42■■■□□ 2.94
SHROOM4Q9ULL8 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC33.42■■■□□ 2.94
SHROOM4Q9ULL8 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
SHROOM4Q9ULL8 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC33.42■■■□□ 2.94
SHROOM4Q9ULL8 VN2R19P-201ENST00000442399 1052 ntBASIC33.42■■■□□ 2.94
SHROOM4Q9ULL8 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC33.42■■■□□ 2.94
SHROOM4Q9ULL8 IGHV3-65-201ENST00000523210 341 ntBASIC33.42■■■□□ 2.94
SHROOM4Q9ULL8 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
SHROOM4Q9ULL8 AC012645.4-201ENST00000610691 1061 ntBASIC33.42■■■□□ 2.94
SHROOM4Q9ULL8 AC010507.1-201ENST00000633895 436 ntBASIC33.42■■■□□ 2.94
SHROOM4Q9ULL8 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC33.42■■■□□ 2.94
SHROOM4Q9ULL8 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC33.42■■■□□ 2.94
SHROOM4Q9ULL8 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC33.42■■■□□ 2.94
SHROOM4Q9ULL8 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
SHROOM4Q9ULL8 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
SHROOM4Q9ULL8 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC33.42■■■□□ 2.94
SHROOM4Q9ULL8 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 AC148477.5-201ENST00000625164 1645 ntBASIC33.41■■■□□ 2.94
SHROOM4Q9ULL8 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC33.41■■■□□ 2.94
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms