Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 AL136038.3-201ENST00000561909 1096 ntBASIC18.32■□□□□ 0.52
PCDH9Q9HC56 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 AL445228.2-201ENST00000605589 952 ntBASIC18.32■□□□□ 0.52
PCDH9Q9HC56 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDH9Q9HC56 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 AL645929.1-201ENST00000420084 975 ntBASIC18.31■□□□□ 0.52
PCDH9Q9HC56 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDH9Q9HC56 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.3■□□□□ 0.52
PCDH9Q9HC56 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 ARMC10P1-201ENST00000313754 855 ntBASIC18.3■□□□□ 0.52
PCDH9Q9HC56 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.3■□□□□ 0.52
PCDH9Q9HC56 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms