Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.35■□□□□ 0.05
COL12A1Q99715 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC15.35■□□□□ 0.05
COL12A1Q99715 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
COL12A1Q99715 TBC1D3P5-201ENST00000579401 1545 ntBASIC15.35■□□□□ 0.05
COL12A1Q99715 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL12A1Q99715 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL12A1Q99715 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL12A1Q99715 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC15.35■□□□□ 0.05
COL12A1Q99715 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL12A1Q99715 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL12A1Q99715 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
COL12A1Q99715 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
COL12A1Q99715 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
COL12A1Q99715 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL12A1Q99715 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC15.35■□□□□ 0.05
COL12A1Q99715 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC15.35■□□□□ 0.05
COL12A1Q99715 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC15.35■□□□□ 0.05
COL12A1Q99715 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC15.35■□□□□ 0.05
COL12A1Q99715 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC15.35■□□□□ 0.05
COL12A1Q99715 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.35■□□□□ 0.05
COL12A1Q99715 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC15.35■□□□□ 0.05
COL12A1Q99715 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC15.35■□□□□ 0.05
COL12A1Q99715 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL12A1Q99715 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL12A1Q99715 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC15.35■□□□□ 0.05
COL12A1Q99715 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
COL12A1Q99715 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC15.35■□□□□ 0.05
COL12A1Q99715 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC15.35■□□□□ 0.05
COL12A1Q99715 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL12A1Q99715 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL12A1Q99715 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL12A1Q99715 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL12A1Q99715 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC15.35■□□□□ 0.05
COL12A1Q99715 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL12A1Q99715 SPDYE11-202ENST00000450699 704 ntBASIC15.35■□□□□ 0.05
COL12A1Q99715 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.35■□□□□ 0.05
COL12A1Q99715 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC15.35■□□□□ 0.05
COL12A1Q99715 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
COL12A1Q99715 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC15.35■□□□□ 0.05
COL12A1Q99715 SPDYE9P-201ENST00000570642 692 ntBASIC15.35■□□□□ 0.05
COL12A1Q99715 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC15.35■□□□□ 0.05
COL12A1Q99715 SPDYE10P-202ENST00000612005 668 ntBASIC15.35■□□□□ 0.05
COL12A1Q99715 SPDYE8P-202ENST00000612377 668 ntBASIC15.35■□□□□ 0.05
COL12A1Q99715 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL12A1Q99715 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.34■□□□□ 0.05
COL12A1Q99715 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL12A1Q99715 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL12A1Q99715 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC15.34■□□□□ 0.05
COL12A1Q99715 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL12A1Q99715 TMPRSS11CP-201ENST00000453277 683 ntBASIC15.34■□□□□ 0.05
COL12A1Q99715 IGHV3OR16-16-201ENST00000563644 343 ntBASIC15.34■□□□□ 0.05
COL12A1Q99715 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC15.34■□□□□ 0.05
COL12A1Q99715 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC15.34■□□□□ 0.05
COL12A1Q99715 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC15.34■□□□□ 0.05
COL12A1Q99715 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
COL12A1Q99715 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.34■□□□□ 0.05
COL12A1Q99715 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
COL12A1Q99715 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC15.34■□□□□ 0.05
COL12A1Q99715 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
COL12A1Q99715 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL12A1Q99715 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
COL12A1Q99715 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC15.34■□□□□ 0.05
COL12A1Q99715 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.34■□□□□ 0.05
COL12A1Q99715 AC132938.2-201ENST00000579188 680 ntBASIC15.34■□□□□ 0.05
COL12A1Q99715 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.34■□□□□ 0.05
COL12A1Q99715 AL591163.1-201ENST00000641757 987 ntBASIC15.34■□□□□ 0.05
COL12A1Q99715 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
COL12A1Q99715 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC15.34■□□□□ 0.05
COL12A1Q99715 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC15.34■□□□□ 0.05
COL12A1Q99715 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
COL12A1Q99715 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
COL12A1Q99715 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
COL12A1Q99715 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
COL12A1Q99715 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC15.33■□□□□ 0.05
COL12A1Q99715 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC15.33■□□□□ 0.05
COL12A1Q99715 HAUS4P1-201ENST00000406739 1145 ntBASIC15.33■□□□□ 0.05
COL12A1Q99715 KRT17P8-201ENST00000540749 863 ntBASIC15.33■□□□□ 0.05
COL12A1Q99715 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.05
COL12A1Q99715 AL135744.1-201ENST00000565098 629 ntBASIC15.33■□□□□ 0.05
COL12A1Q99715 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
COL12A1Q99715 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC15.33■□□□□ 0.05
COL12A1Q99715 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.33■□□□□ 0.05
COL12A1Q99715 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
COL12A1Q99715 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
COL12A1Q99715 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC15.33■□□□□ 0.04
COL12A1Q99715 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL12A1Q99715 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
COL12A1Q99715 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL12A1Q99715 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
COL12A1Q99715 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC15.33■□□□□ 0.04
COL12A1Q99715 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
COL12A1Q99715 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.33■□□□□ 0.04
COL12A1Q99715 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.33■□□□□ 0.04
COL12A1Q99715 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
COL12A1Q99715 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC15.33■□□□□ 0.04
COL12A1Q99715 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
COL12A1Q99715 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
COL12A1Q99715 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC15.33■□□□□ 0.04
COL12A1Q99715 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL12A1Q99715 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms