Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
NUP88Q99567 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.74■□□□□ 0.91
NUP88Q99567 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.74■□□□□ 0.91
NUP88Q99567 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NUP88Q99567 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
NUP88Q99567 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NUP88Q99567 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
NUP88Q99567 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NUP88Q99567 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NUP88Q99567 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NUP88Q99567 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NUP88Q99567 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NUP88Q99567 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NUP88Q99567 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
NUP88Q99567 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NUP88Q99567 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
NUP88Q99567 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC20.73■□□□□ 0.91
NUP88Q99567 AC021087.4-201ENST00000563761 564 ntBASIC20.73■□□□□ 0.91
NUP88Q99567 AL671883.3-201ENST00000603274 991 ntBASIC20.73■□□□□ 0.91
NUP88Q99567 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC20.73■□□□□ 0.91
NUP88Q99567 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
NUP88Q99567 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NUP88Q99567 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NUP88Q99567 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.73■□□□□ 0.91
NUP88Q99567 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NUP88Q99567 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC20.73■□□□□ 0.91
NUP88Q99567 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
NUP88Q99567 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NUP88Q99567 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC20.73■□□□□ 0.91
NUP88Q99567 TBC1D3P5-201ENST00000579401 1545 ntBASIC20.73■□□□□ 0.91
NUP88Q99567 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NUP88Q99567 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
NUP88Q99567 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NUP88Q99567 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NUP88Q99567 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
NUP88Q99567 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NUP88Q99567 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.72■□□□□ 0.91
NUP88Q99567 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
NUP88Q99567 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
NUP88Q99567 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NUP88Q99567 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.72■□□□□ 0.91
NUP88Q99567 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.72■□□□□ 0.91
NUP88Q99567 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NUP88Q99567 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NUP88Q99567 TEX30-205ENST00000376029 959 ntTSL 2 BASIC20.72■□□□□ 0.91
NUP88Q99567 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC20.72■□□□□ 0.91
NUP88Q99567 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NUP88Q99567 AC073648.2-201ENST00000510116 352 ntBASIC20.72■□□□□ 0.91
NUP88Q99567 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC20.72■□□□□ 0.91
NUP88Q99567 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC20.72■□□□□ 0.91
NUP88Q99567 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
NUP88Q99567 FAM215A-202ENST00000632077 792 ntBASIC20.72■□□□□ 0.91
NUP88Q99567 AF228730.7-201ENST00000641842 219 ntBASIC20.72■□□□□ 0.91
NUP88Q99567 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NUP88Q99567 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC20.72■□□□□ 0.91
NUP88Q99567 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC20.72■□□□□ 0.91
NUP88Q99567 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NUP88Q99567 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NUP88Q99567 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
NUP88Q99567 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NUP88Q99567 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NUP88Q99567 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
NUP88Q99567 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NUP88Q99567 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NUP88Q99567 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
NUP88Q99567 AL354751.1-201ENST00000412768 1863 ntBASIC20.71■□□□□ 0.91
NUP88Q99567 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.71■□□□□ 0.91
NUP88Q99567 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC20.71■□□□□ 0.91
NUP88Q99567 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC20.71■□□□□ 0.91
NUP88Q99567 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NUP88Q99567 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NUP88Q99567 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
NUP88Q99567 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NUP88Q99567 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NUP88Q99567 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
NUP88Q99567 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
NUP88Q99567 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
NUP88Q99567 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC20.71■□□□□ 0.91
NUP88Q99567 FAM220CP-201ENST00000395253 831 ntBASIC20.71■□□□□ 0.91
NUP88Q99567 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC20.71■□□□□ 0.91
NUP88Q99567 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC20.71■□□□□ 0.91
NUP88Q99567 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC20.71■□□□□ 0.91
NUP88Q99567 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC20.71■□□□□ 0.91
NUP88Q99567 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC20.71■□□□□ 0.91
NUP88Q99567 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC20.71■□□□□ 0.91
NUP88Q99567 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC20.71■□□□□ 0.91
NUP88Q99567 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
NUP88Q99567 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
NUP88Q99567 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
NUP88Q99567 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NUP88Q99567 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC20.71■□□□□ 0.91
NUP88Q99567 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.71■□□□□ 0.91
NUP88Q99567 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC20.71■□□□□ 0.91
NUP88Q99567 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NUP88Q99567 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
NUP88Q99567 POR-209ENST00000439269 1858 ntTSL 2 BASIC20.71■□□□□ 0.91
NUP88Q99567 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC20.7■□□□□ 0.91
NUP88Q99567 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
NUP88Q99567 AC100803.2-201ENST00000562459 1963 ntBASIC20.7■□□□□ 0.9
NUP88Q99567 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms