Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ABR-204ENST00000543210 1049 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 ABR-217ENST00000572441 563 ntTSL 4 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 NPAP1P7-201ENST00000613027 823 ntBASIC13.72□□□□□ -0.21
CCDC140Q96MF4 BCL10-202ENST00000620248 774 ntTSL 5 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
CCDC140Q96MF4 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC140Q96MF4 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC140Q96MF4 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC140Q96MF4 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC140Q96MF4 PP12613-201ENST00000424958 2230 ntBASIC13.71□□□□□ -0.21
CCDC140Q96MF4 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC13.71□□□□□ -0.21
CCDC140Q96MF4 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC140Q96MF4 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC13.71□□□□□ -0.21
CCDC140Q96MF4 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC140Q96MF4 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC13.71□□□□□ -0.21
CCDC140Q96MF4 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC140Q96MF4 AC005104.2-201ENST00000427818 678 ntBASIC13.71□□□□□ -0.21
CCDC140Q96MF4 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC140Q96MF4 LINC00265-3P-201ENST00000447588 903 ntBASIC13.71□□□□□ -0.21
CCDC140Q96MF4 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC13.71□□□□□ -0.21
CCDC140Q96MF4 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC140Q96MF4 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC13.71□□□□□ -0.21
CCDC140Q96MF4 MIR3180-1-201ENST00000580374 94 ntBASIC13.71□□□□□ -0.21
CCDC140Q96MF4 MIR3180-3-201ENST00000584616 94 ntBASIC13.71□□□□□ -0.21
CCDC140Q96MF4 TMED1-207ENST00000591695 809 ntTSL 5 BASIC13.71□□□□□ -0.21
CCDC140Q96MF4 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CCDC140Q96MF4 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC140Q96MF4 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC140Q96MF4 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CCDC140Q96MF4 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC13.71□□□□□ -0.21
CCDC140Q96MF4 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC140Q96MF4 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC140Q96MF4 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC13.71□□□□□ -0.22
CCDC140Q96MF4 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC140Q96MF4 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC140Q96MF4 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC140Q96MF4 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC140Q96MF4 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC140Q96MF4 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC140Q96MF4 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
CCDC140Q96MF4 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
CCDC140Q96MF4 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC13.71□□□□□ -0.22
CCDC140Q96MF4 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 FZD10-202ENST00000539839 3282 ntBASIC13.7□□□□□ -0.22
CCDC140Q96MF4 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 COX5BP2-201ENST00000392354 334 ntBASIC13.7□□□□□ -0.22
CCDC140Q96MF4 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 IL11-204ENST00000590625 1028 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 Z69720.1-201ENST00000601483 472 ntBASIC13.7□□□□□ -0.22
CCDC140Q96MF4 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 PC-208ENST00000529047 1607 ntTSL 3 BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CCDC140Q96MF4 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC140Q96MF4 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC13.69□□□□□ -0.22
CCDC140Q96MF4 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC140Q96MF4 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC140Q96MF4 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CCDC140Q96MF4 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms