Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LMX1AQ8TE12 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.23■□□□□ 0.35
LMX1AQ8TE12 KLF4P1-201ENST00000412782 1185 ntBASIC17.23■□□□□ 0.35
LMX1AQ8TE12 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.23■□□□□ 0.35
LMX1AQ8TE12 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LMX1AQ8TE12 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.23■□□□□ 0.35
LMX1AQ8TE12 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LMX1AQ8TE12 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.23■□□□□ 0.35
LMX1AQ8TE12 AL049757.1-201ENST00000616842 1596 ntBASIC17.23■□□□□ 0.35
LMX1AQ8TE12 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LMX1AQ8TE12 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.22■□□□□ 0.35
LMX1AQ8TE12 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 AC132938.5-201ENST00000624980 1813 ntBASIC17.22■□□□□ 0.35
LMX1AQ8TE12 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 KRT18P27-201ENST00000427733 1299 ntBASIC17.22■□□□□ 0.35
LMX1AQ8TE12 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 AC009947.1-201ENST00000444350 727 ntBASIC17.22■□□□□ 0.35
LMX1AQ8TE12 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 AC136632.2-201ENST00000512891 861 ntBASIC17.22■□□□□ 0.35
LMX1AQ8TE12 RNA5SP416-201ENST00000516838 111 ntBASIC17.22■□□□□ 0.35
LMX1AQ8TE12 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 AC109462.3-201ENST00000573934 613 ntBASIC17.22■□□□□ 0.35
LMX1AQ8TE12 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 PGM5P2-202ENST00000637225 1043 ntBASIC17.22■□□□□ 0.35
LMX1AQ8TE12 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1AQ8TE12 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
LMX1AQ8TE12 REXO1L9P-201ENST00000604264 2108 ntBASIC17.21■□□□□ 0.35
LMX1AQ8TE12 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1AQ8TE12 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1AQ8TE12 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.21■□□□□ 0.35
LMX1AQ8TE12 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.21■□□□□ 0.35
LMX1AQ8TE12 BX323043.1-201ENST00000641006 1765 ntBASIC17.21■□□□□ 0.35
LMX1AQ8TE12 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.21■□□□□ 0.35
LMX1AQ8TE12 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.21■□□□□ 0.35
LMX1AQ8TE12 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.21■□□□□ 0.35
LMX1AQ8TE12 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.21■□□□□ 0.35
LMX1AQ8TE12 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.21■□□□□ 0.35
LMX1AQ8TE12 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.21■□□□□ 0.35
LMX1AQ8TE12 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.21■□□□□ 0.35
LMX1AQ8TE12 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1AQ8TE12 AL589182.2-201ENST00000619332 1049 ntBASIC17.21■□□□□ 0.35
LMX1AQ8TE12 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1AQ8TE12 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1AQ8TE12 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1AQ8TE12 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1AQ8TE12 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.21■□□□□ 0.35
LMX1AQ8TE12 AC009949.1-201ENST00000623048 1830 ntBASIC17.21■□□□□ 0.35
LMX1AQ8TE12 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1AQ8TE12 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.21■□□□□ 0.35
LMX1AQ8TE12 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
LMX1AQ8TE12 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.21■□□□□ 0.34
LMX1AQ8TE12 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
LMX1AQ8TE12 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
LMX1AQ8TE12 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 AC073621.1-201ENST00000392730 636 ntBASIC17.2■□□□□ 0.34
LMX1AQ8TE12 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LMX1AQ8TE12 AC148477.5-201ENST00000625164 1645 ntBASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms